Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split)
The split of Fulco 2019, Gasperini 2019 and Enformer enhancer set that BEND evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evaluation results
Release 2026-09-17-134cd1815de8 · 16 evaluations · 16 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AWD-LSTM on BEND ENHANCER: Enhancer annotation Method: AWD-LSTMTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.03 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(AWD-LSTM), column(Enhancer annotation) Source checking is not independent reproduction. |
| CNN on BEND ENHANCER: Enhancer annotation Method: CNNTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.03 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(CNN), column(Enhancer annotation) Source checking is not independent reproduction. |
| DNABERT-2 on BEND ENHANCER: Enhancer annotation Configuration: DNABERT-2Task: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.03 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(DNABERT-2), column(Enhancer annotation) Source checking is not independent reproduction. |
| DNABERT on BEND ENHANCER: Enhancer annotation Configuration: DNABERTTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.03 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(DNABERT), column(Enhancer annotation) Source checking is not independent reproduction. |
| ENFORMER on BEND ENHANCER: Enhancer annotation Configuration: ENFORMERTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.07 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(Expert method), column(Enhancer annotation) Source checking is not independent reproduction. |
| GENA-LM BERT on BEND ENHANCER: Enhancer annotation Configuration: GENA-LM BERTTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.03 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(GENA-LM BERT), column(Enhancer annotation) Source checking is not independent reproduction. |
| GENA-LM BigBird on BEND ENHANCER: Enhancer annotation Configuration: GENA-LM BigBirdTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.04 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(GENA-LM BigBird), column(Enhancer annotation) Source checking is not independent reproduction. |
| GROVER on BEND ENHANCER: Enhancer annotation Configuration: GROVERTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.03 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(GROVER), column(Enhancer annotation) Source checking is not independent reproduction. |
| HyenaDNA large on BEND ENHANCER: Enhancer annotation Configuration: HyenaDNA largeTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.03 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(HyenaDNA large), column(Enhancer annotation) Source checking is not independent reproduction. |
| HyenaDNA tiny on BEND ENHANCER: Enhancer annotation Configuration: HyenaDNA tinyTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.02 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(HyenaDNA tiny), column(Enhancer annotation) Source checking is not independent reproduction. |
| NT-1000G on BEND ENHANCER: Enhancer annotation Configuration: NT-1000GTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.04 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(NT-1000G), column(Enhancer annotation) Source checking is not independent reproduction. |
| NT-H on BEND ENHANCER: Enhancer annotation Method: NT-HTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.05 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(NT-H), column(Enhancer annotation) Source checking is not independent reproduction. |
| NT-MS on BEND ENHANCER: Enhancer annotation Method: NT-MSTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.06 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(NT-MS), column(Enhancer annotation) Source checking is not independent reproduction. |
| NT-V2 on BEND ENHANCER: Enhancer annotation Configuration: NT-V2Task: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.05 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(NT-V2), column(Enhancer annotation) Source checking is not independent reproduction. |
| ResNet on BEND ENHANCER: Enhancer annotation Configuration: ResNetTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.06 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(ResNet), column(Enhancer annotation) Source checking is not independent reproduction. |
| ResNet-LM on BEND ENHANCER: Enhancer annotation Method: ResNet-LMTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.02 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(ResNet-LM), column(Enhancer annotation) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of Fulco 2019, Gasperini 2019 and Enformer enhancer set that BEND evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: bend-dataset-fulco-2019-gasperini-2019-and-enformer-enhancer-set
- areas
- dna-genomes
- missing metadata
- version: unreported; url: unextracted
Related records
- dataset: AWD-LSTM on BEND ENHANCER: Enhancer annotation
- dataset: CNN on BEND ENHANCER: Enhancer annotation
- dataset: DNABERT-2 on BEND ENHANCER: Enhancer annotation
- dataset: DNABERT on BEND ENHANCER: Enhancer annotation
- dataset: ENFORMER on BEND ENHANCER: Enhancer annotation
- dataset: GENA-LM BERT on BEND ENHANCER: Enhancer annotation
- dataset: GENA-LM BigBird on BEND ENHANCER: Enhancer annotation
- dataset: GROVER on BEND ENHANCER: Enhancer annotation
- dataset: HyenaDNA large on BEND ENHANCER: Enhancer annotation
- dataset: HyenaDNA tiny on BEND ENHANCER: Enhancer annotation
- dataset: NT-1000G on BEND ENHANCER: Enhancer annotation
- dataset: NT-H on BEND ENHANCER: Enhancer annotation
- dataset: NT-MS on BEND ENHANCER: Enhancer annotation
- dataset: NT-V2 on BEND ENHANCER: Enhancer annotation
- dataset: ResNet on BEND ENHANCER: Enhancer annotation
- dataset: ResNet-LM on BEND ENHANCER: Enhancer annotation