HyenaDNA large on BEND ENHANCER: Enhancer annotation
BEND evaluation of HyenaDNA large on Enhancer annotation, scored with AUPRC.
Methods and reproduction
BEND evaluation of HyenaDNA large on Enhancer annotation, scored with AUPRC.
- task
- BEND ENHANCER: Enhancer annotation
- configuration
- HyenaDNA large
- dataset subset
- Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- AUPRC
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1.
- Configuration
- HyenaDNA large
- Task
- BEND ENHANCER: Enhancer annotation
- Dataset subset
- Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- bend-task-enhancer
- metric implementation
- AUPRC
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| HyenaDNA large on BEND ENHANCER: Enhancer annotation Configuration: HyenaDNA largeTask: BEND ENHANCER: Enhancer annotationDataset subset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split) A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.03 auprc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedBEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Table 3, row(HyenaDNA large), column(Enhancer annotation) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation AUPRC Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id bend-task-enhancer Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(HyenaDNA large), column(Enhancer annotation) Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description BEND evaluation of HyenaDNA large on Enhancer annotation, scored with AUPRC. Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark bend-task-enhancer Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset bend-dataset-fulco-2019-gasperini-2019-and-enformer-enhancer-set Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model bend-method-hyenadna-large Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name HyenaDNA large on BEND ENHANCER: Enhancer annotation Context-only references | BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks Table 3, row(HyenaDNA large), column(Enhancer annotation) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: bend-evaluation-hyenadna-large-enhancer
- areas
- dna-genomes
- tasks
- Enhancer annotation
- origin
- author_reported
- protocol
- A downstream head trained on frozen embeddings, except for the expert methods and the fully supervised baselines, which are trained end to end. Metric and splits are from Table 1.
- comparison
- protocol id: bend-task-enhancer; metric implementation: AUPRC
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 3, row(HyenaDNA large), column(Enhancer annotation)
Related records
- benchmark: BEND ENHANCER: Enhancer annotation
- model: HyenaDNA large
- dataset: Fulco 2019, Gasperini 2019 and Enformer enhancer set (BEND split)
- evaluation: HyenaDNA large · BEND ENHANCER · AUPRC