Dataset subset

mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)

Dataset subset reported in MIMIC v1: Table S11 and Appendix D.3. Exact split manifest remains unextracted; source-table identity is retained.

Evaluation results

12 evaluations · 12 metric rows. Different protocols are not a single leaderboard.

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Pipeline: AIDO-RNA	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.343 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source AIDO-RNA on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 2 (AIDO-RNA [ 118 ]), column 4 (Protein Localization)
Pipeline: Dilated ResNet	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.169 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source Dilated ResNet on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 3 (Dilated ResNet [ 71 ]), column 4 (Protein Localization)
Pipeline: DNABERT-S	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.311 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source DNABERT-S on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 5 (DNABERT-S [ 119 ]), column 4 (Protein Localization)
Pipeline: DNABERT2	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.325 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source DNABERT2 on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 4 (DNABERT2 [ 33 ]), column 4 (Protein Localization)
Pipeline: ERNIE-RNA	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.338 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source ERNIE-RNA on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 6 (ERNIE-RNA [ 120 ]), column 4 (Protein Localization)
Pipeline: Evo2	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.408 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source Evo2 on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 7 (Evo2 [ 29 ]), column 4 (Protein Localization)
Pipeline: HyenaDNA	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.311 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source HyenaDNA on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 8 (HyenaDNA [ 31 ]), column 4 (Protein Localization)
Pipeline: MIMIC	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.415 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · source checked Methods, coverage and source MIMIC on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 1 (MIMIC), column 4 (Protein Localization)
Pipeline: NT-v2	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.336 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source NT-v2 on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 9 (NT-v2 [ 121 ]), column 4 (Protein Localization)
Pipeline: Orthrus	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.396 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source Orthrus on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 4 (Protein Localization)
Pipeline: RiNALMo	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.327 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source RiNALMo on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 11 (RiNALMo [ 122 ]), column 4 (Protein Localization)
Pipeline: SpliceBERT	Protocol: MIMIC mRNABench probes Protein Localization: Protein Localization prediction Dataset subset: mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)	0.360 auprc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible	Result quoted from another source · source checked Methods, coverage and source SpliceBERT on MIMIC mRNABench probes Protein Localization: Protein Localization prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 12 (SpliceBERT [ 77 ]), column 4 (Protein Localization)

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Claims, original sources and review scope · Release 2026-09-23-2b89723c6dd9
Property and statement	Original source and location	Review and provenance
description Dataset subset reported in MIMIC v1: Table S11 and Appendix D.3. Exact split manifest remains unextracted; source-table identity is retained. Context-only references	MIMIC v1: Table S11 and Appendix D.3 Original source ↗ No field-specific location recorded Version: arXiv version 1 Retrieved: 2026-09-23	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
name mRNABench Protein Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split) Context-only references	MIMIC v1: Table S11 and Appendix D.3 Original source ↗ No field-specific location recorded Version: arXiv version 1 Retrieved: 2026-09-23	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `6408e6fae37567837ca53bd8a1ebef6cf7d3787bbf00dae7556e1b62822ffff0` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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MIMIC v1: Table S11 and Appendix D.3 · Original source · arXiv version 1

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Stable ID: mimic-2026-mrnabench-dataset-mrnabench-protein-localization-as-reported-in-mimic-table-s11

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