Antibiotic resistance (PFMBench split)
The split of Antibiotic resistance that PFMBench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evaluation results
Release 2026-09-17-134cd1815de8 · 12 evaluations · 12 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DPLM on PFMBench ANTI-RES: Antibiotic resistance Configuration: DPLMTask: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0 .68732 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(DPLM [ 68 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| ESM-2 on PFMBench ANTI-RES: Antibiotic resistance Configuration: ESM-2Task: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.63422 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ESM-2 [ 35 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| ESM-C on PFMBench ANTI-RES: Antibiotic resistance Configuration: ESM-CTask: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.67257 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ESM-C), column(Anti.Res.) Source checking is not independent reproduction. |
| ESM3 on PFMBench ANTI-RES: Antibiotic resistance Configuration: ESM3Task: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.58407 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ESM3 [ 18 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| PGLM on PFMBench ANTI-RES: Antibiotic resistance Configuration: PGLMTask: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.67257 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(PGLM [ 5 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| ProstT5 on PFMBench ANTI-RES: Antibiotic resistance Configuration: ProstT5Task: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.69027 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ProstT5 [ 21 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| ProtGPT2 on PFMBench ANTI-RES: Antibiotic resistance Configuration: ProtGPT2Task: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.68437 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ProtGPT2 [ 12 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| ProTrek on PFMBench ANTI-RES: Antibiotic resistance Configuration: ProTrekTask: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.59292 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ProTrek [ 56 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| ProtST on PFMBench ANTI-RES: Antibiotic resistance Configuration: ProtSTTask: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.63422 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ProtST [ 71 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| ProtT5 on PFMBench ANTI-RES: Antibiotic resistance Configuration: ProtT5Task: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0 .68732 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ProtT5 [ 11 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| SaProt on PFMBench ANTI-RES: Antibiotic resistance Configuration: SaProtTask: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.65782 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(SaProt [ 55 ]), column(Anti.Res.) Source checking is not independent reproduction. |
| VenusPLM on PFMBench ANTI-RES: Antibiotic resistance Configuration: VenusPLMTask: PFMBench ANTI-RES: Antibiotic resistanceDataset subset: Antibiotic resistance (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.64602 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(VenusPLM [ 59 ]), column(Anti.Res.) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of Antibiotic resistance that PFMBench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | pfmbench primary benchmark evidence No field-specific location recorded Version: 2506.14796v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Antibiotic resistance (PFMBench split) Context-only references | pfmbench primary benchmark evidence No field-specific location recorded Version: 2506.14796v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- pfmbench primary benchmark evidence · Original source · 2506.14796v1
Technical metadata and extraction receipts
Stable ID: pfmbench-dataset-antibiotic-resistance
- areas
- proteins-complexes
- missing metadata
- version: unreported; url: unextracted
Related records
- dataset: DPLM on PFMBench ANTI-RES: Antibiotic resistance
- dataset: ESM-2 on PFMBench ANTI-RES: Antibiotic resistance
- dataset: ESM-C on PFMBench ANTI-RES: Antibiotic resistance
- dataset: ESM3 on PFMBench ANTI-RES: Antibiotic resistance
- dataset: PGLM on PFMBench ANTI-RES: Antibiotic resistance
- dataset: ProstT5 on PFMBench ANTI-RES: Antibiotic resistance
- dataset: ProtGPT2 on PFMBench ANTI-RES: Antibiotic resistance
- dataset: ProTrek on PFMBench ANTI-RES: Antibiotic resistance
- dataset: ProtST on PFMBench ANTI-RES: Antibiotic resistance
- dataset: ProtT5 on PFMBench ANTI-RES: Antibiotic resistance
- dataset: SaProt on PFMBench ANTI-RES: Antibiotic resistance
- dataset: VenusPLM on PFMBench ANTI-RES: Antibiotic resistance