Vamb fa045c0 (J1) · CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded · marmgCAMI2_short_read_pooled_gold_standard_assembly
CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded; marmgCAMI2_short_read_pooled_gold_standard_assembly. Source checked, not independently reproduced.
Evaluation results
Release 2026-09-19-eb6149e5d766 · 1 evaluation · 16 metric rows. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Vamb fa045c0 (J1) · CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded · marmgCAMI2_short_read_pooled_gold_standard_assembly Configuration: Vamb fa045c0 (J1)Protocol: CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded · marmgCAMI2_short_read_pooled_gold_standard_assemblyDataset subset: marmgCAMI2_short_read_pooled_gold_standard_assembly CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded Independent external evaluation · Evaluation metadata: discovered | ||
| 0.5560185796381223 Average completeness (bp) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: kind: standard error; printed value: 0.015359501805006384; source column: Std error of av. completeness (bp) Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Average completeness (bp) Source checking is not independent reproduction. |
| 0.0888337854916914 Accuracy (seq) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Accuracy (seq) Source checking is not independent reproduction. |
| 0.8845199874095058 Purity (seq) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Purity (seq) Source checking is not independent reproduction. |
| 0.8843398221856389 Purity (bp) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Purity (bp) Source checking is not independent reproduction. |
| 0.996300961460124 Average purity (seq) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: kind: standard error; printed value: 0.00023827262448329302; source column: Std error of av. purity (seq) Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Average purity (seq) Source checking is not independent reproduction. |
| 0.6094059653942256 F1 score (seq) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column F1 score (seq) Source checking is not independent reproduction. |
| 0.1009962867340876 Percentage of binned sequences Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Percentage of binned sequences Source checking is not independent reproduction. |
| 0.6144310630063086 Completeness (bp) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Completeness (bp) Source checking is not independent reproduction. |
| 0.7138924549010716 F1 score (bp) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column F1 score (bp) Source checking is not independent reproduction. |
| 0.7023375704884746 Percentage of binned bp Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Percentage of binned bp Source checking is not independent reproduction. |
| 0.7436745265597888 Adjusted Rand index (bp) Unit: dimensionless · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Adjusted Rand index (bp) Source checking is not independent reproduction. |
| 0.43894846998233766 Average completeness (seq) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: kind: standard error; printed value: 0.014461960662546977; source column: Std error of av. completeness (seq) Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Average completeness (seq) Source checking is not independent reproduction. |
| 0.6657553926995079 Adjusted Rand index (seq) Unit: dimensionless · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Adjusted Rand index (seq) Source checking is not independent reproduction. |
| 0.06761132041831655 Completeness (seq) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Completeness (seq) Source checking is not independent reproduction. |
| 0.9969678471835975 Average purity (bp) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: kind: standard error; printed value: 0.00019932495179764462; source column: Std error of av. purity (bp) Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Average purity (bp) Source checking is not independent reproduction. |
| 0.6209479883720791 Accuracy (bp) Unit: fraction · Direction: higher Aggregation: source aggregate over pooled assembly, not sample averaging | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedCAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Source checking is not independent reproduction. |
Methods and reproduction
CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded; marmgCAMI2_short_read_pooled_gold_standard_assembly. Source checked, not independently reproduced.
- configuration
- Vamb fa045c0 (J1)
- protocol
- CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded · marmgCAMI2_short_read_pooled_gold_standard_assembly
- dataset subset
- marmgCAMI2_short_read_pooled_gold_standard_assembly
- Split
- marmgCAMI2_short_read_pooled_gold_standard_assembly
- Adaptation
- unreported
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded
- Configuration
- Vamb fa045c0 (J1)
- Protocol
- CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded · marmgCAMI2_short_read_pooled_gold_standard_assembly
- Dataset subset
- marmgCAMI2_short_read_pooled_gold_standard_assembly
- origin
- Independent external evaluation
- configuration
- Not reported
- protocol id
- acquired-protocol-f443b5fdaee9129f2b7a
- dataset version
- 501b543f65d62e5c1d6c3813be0badcac5e079ca
- split
- marmgCAMI2_short_read_pooled_gold_standard_assembly
- population
- marmgCAMI2_short_read_pooled_gold_standard_assembly
- inputs
- unreported
- adaptation
- unreported
- aggregation
- metric-specific; inspect each result
Metadata review: discovered. Unreported conditions prevent automatic comparisons.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
22 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation unreported Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.comparison.aggregation metric-specific; inspect each result Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.comparison.dataset_version 501b543f65d62e5c1d6c3813be0badcac5e079ca Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.comparison.inputs unreported Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.comparison.population marmgCAMI2_short_read_pooled_gold_standard_assembly Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.comparison.protocol_id acquired-protocol-f443b5fdaee9129f2b7a Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.comparison.split marmgCAMI2_short_read_pooled_gold_standard_assembly Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.conditions.binning_type genome Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.conditions.circular_elements excluded by -k circular element Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
| attributes.conditions.edition CAMI II Context-only references | CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp) Version: 501b543f65d62e5c1d6c3813be0badcac5e079ca | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
Sources and history
View linked audit checks and correction history
Release 2026-09-19-eb6149e5d766 · Record review: discovered
1 source records and release history
- CAMI: 501b543f65d62e5c1d6c3813be0badcac5e079ca · Original source · 501b543f65d62e5c1d6c3813be0badcac5e079ca
Technical metadata and extraction receipts
Stable ID: acquired-evaluation-a2cfc53a534549ea7ca6
- origin
- independent_paper
- protocol
- CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded
- source locator
- line 17; Tool=Vamb fa045c0 (J1); column Accuracy (bp)
- conditions
- edition: CAMI II; evaluator: AMBER; binning type: genome; rank: NA; circular elements: excluded by -k circular element; input: pooled short-read gold-standard assembly; gold standard reference: false
- comparison
- protocol id: acquired-protocol-f443b5fdaee9129f2b7a; dataset version: 501b543f65d62e5c1d6c3813be0badcac5e079ca; split: marmgCAMI2_short_read_pooled_gold_standard_assembly; population: marmgCAMI2_short_read_pooled_gold_standard_assembly; inputs: unreported; adaptation: unreported; aggregation: metric-specific; inspect each result
- missing metadata
- checkpoint revision: unreported; scored count: unreported
Related records
- model: Vamb fa045c0 (J1)
- benchmark: CAMI II marine genome binning; pooled short-read gold-standard assembly; circular elements excluded · marmgCAMI2_short_read_pooled_gold_standard_assembly
- dataset: marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Average completeness (bp) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Accuracy (seq) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Purity (seq) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Purity (bp) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Average purity (seq) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · F1 score (seq) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Percentage of binned sequences · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Completeness (bp) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · F1 score (bp) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Percentage of binned bp · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Adjusted Rand index (bp) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Average completeness (seq) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Adjusted Rand index (seq) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Completeness (seq) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Average purity (bp) · marmgCAMI2_short_read_pooled_gold_standard_assembly
- evaluation: Vamb fa045c0 (J1) · Accuracy (bp) · marmgCAMI2_short_read_pooled_gold_standard_assembly