UTRBERT-3mer on BEACON PRS: Programmable RNA switch prediction
BEACON harness evaluation of UTRBERT-3mer on Programmable RNA switch prediction, scored with R2.
Methods and reproduction
BEACON harness evaluation of UTRBERT-3mer on Programmable RNA switch prediction, scored with R2.
- task
- BEACON PRS: Programmable RNA switch prediction
- configuration
- UTRBERT-3mer
- dataset subset
- Angenent-Mari's switch set (BEACON split)
- Split
- 73,227/9,153/9,154
- Adaptation
- Published pre-trained RNA language model, fine-tuned by the BEACON authors
- Scoring implementation
- R2
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
BEACON harness, fixed downstream head per task. Train/validation/test 73,227/9,153/9,154; dataset Angenent-Mari's switch set.
- Configuration
- UTRBERT-3mer
- Task
- BEACON PRS: Programmable RNA switch prediction
- Dataset subset
- Angenent-Mari's switch set (BEACON split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- beacon-task-prs
- split
- 73,227/9,153/9,154
- adaptation
- Published pre-trained RNA language model, fine-tuned by the BEACON authors
- metric implementation
- R2
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-1a18ca2c038a · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| UTRBERT-3mer on BEACON PRS: Programmable RNA switch prediction Configuration: UTRBERT-3merTask: BEACON PRS: Programmable RNA switch predictionDataset subset: Angenent-Mari's switch set (BEACON split) BEACON harness, fixed downstream head per task. Train/validation/test 73,227/9,153/9,154; dataset Angenent-Mari's switch set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 56.83(0.26)% r2 Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.26 Scored: Not reported · Eligible: Not reported | source checkedBEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Table3,p.8,row(UTRBERT-3mer),column(PRS) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
12 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Published pre-trained RNA language model, fine-tuned by the BEACON authors Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation R2 Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id beacon-task-prs Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.split 73,227/9,153/9,154 Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin author_reported Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol BEACON harness, fixed downstream head per task. Train/validation/test 73,227/9,153/9,154; dataset Angenent-Mari's switch set. Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Table3,p.8,row(UTRBERT-3mer),column(PRS) Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description BEACON harness evaluation of UTRBERT-3mer on Programmable RNA switch prediction, scored with R2. Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: benchmark beacon-task-prs Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: dataset beacon-dataset-angenent-mari-s-switch-set Context-only references | BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) Table3,p.8,row(UTRBERT-3mer),column(PRS) Version: v2, 12 December 2024 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-09-17-1a18ca2c038a · Record review: source checked
1 source records and release history
- BEACON: Benchmark for Comprehensive RNA Tasks and Language Models (arXiv:2406.10391v2) · Original source · v2, 12 December 2024
Technical metadata and extraction receipts
Stable ID: beacon-evaluation-utrbert-3mer-prs
- areas
- rna-transcriptomes
- tasks
- Programmable RNA switch prediction
- origin
- author_reported
- protocol
- BEACON harness, fixed downstream head per task. Train/validation/test 73,227/9,153/9,154; dataset Angenent-Mari's switch set.
- comparison
- protocol id: beacon-task-prs; split: 73,227/9,153/9,154; adaptation: Published pre-trained RNA language model, fine-tuned by the BEACON authors; metric implementation: R2
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table3,p.8,row(UTRBERT-3mer),column(PRS)
Related records
- benchmark: BEACON PRS: Programmable RNA switch prediction
- model: UTRBERT-3mer
- dataset: Angenent-Mari's switch set (BEACON split)
- evaluation: UTRBERT-3mer · BEACON PRS · R2