Caduceus (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
DART-Eval evaluation of Caduceus (fine-tuned) on Chromatin activity prediction, IMR90, positives against negatives, scored with AUROC.
Methods and reproduction
DART-Eval evaluation of Caduceus (fine-tuned) on Chromatin activity prediction, IMR90, positives against negatives, scored with AUROC.
- task
- DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- configuration
- Caduceus (fine-tuned)
- dataset subset
- ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- AUROC
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Separating positive IMR90 peaks from matched negatives.
- Configuration
- Caduceus (fine-tuned)
- Task
- DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- Dataset subset
- ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- dart-eval-task-ca-auroc-imr90
- metric implementation
- AUROC
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Caduceus (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive IMR90 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.976 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation AUROC Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id dart-eval-task-ca-auroc-imr90 Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Separating positive IMR90 peaks from matched negatives. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description DART-Eval evaluation of Caduceus (fine-tuned) on Chromatin activity prediction, IMR90, positives against negatives, scored with AUROC. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark dart-eval-task-ca-auroc-imr90 Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset dart-eval-dataset-encode-chromatin-accessibility-peaks-in-five-cell-lines Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model dart-eval-method-caduceus-fine-tuned Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Caduceus (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-evaluation-caduceus-fine-tuned-ca-auroc-imr90
- areas
- dna-genomes
- tasks
- Chromatin activity prediction, IMR90, positives against negatives
- origin
- author_reported
- protocol
- Separating positive IMR90 peaks from matched negatives.
- comparison
- protocol id: dart-eval-task-ca-auroc-imr90; metric implementation: AUROC
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90)