Dataset subset
ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
The split of ENCODE chromatin accessibility peaks in five cell lines that DART-Eval evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evaluation results
Release 2026-09-17-134cd1815de8 · 214 evaluations · 214 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Caduceus (fine-tuned) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive GM12878 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.935 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-GM12878) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive H1ESC peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.954 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-H1ESC) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive HEPG2 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.896 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-HEPG2) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive IMR90 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.976 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-IMR90) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive K562 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.933 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-AUROC-K562) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive GM12878 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.503 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-SPEARMAN-GM12878) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive H1ESC peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.744 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-SPEARMAN-H1ESC) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive HEPG2 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.454 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-SPEARMAN-HEPG2) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.479 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive K562 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.570 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-SPEARMAN-K562) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy Configuration: Caduceus (fine-tuned)Task: DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Classify which of five cell lines a accessible element belongs to. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.671 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned Caduceus), column(CTS-ACC) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878 Configuration: Caduceus (fine-tuned)Task: DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) One-against-rest AUROC for GM12878 accessible elements. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.900 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned Caduceus), column(CTS-GM12878) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC Configuration: Caduceus (fine-tuned)Task: DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESCDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) One-against-rest AUROC for H1ESC accessible elements. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.937 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned Caduceus), column(CTS-H1ESC) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2 Configuration: Caduceus (fine-tuned)Task: DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) One-against-rest AUROC for HEPG2 accessible elements. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.901 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned Caduceus), column(CTS-HEPG2) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90 Configuration: Caduceus (fine-tuned)Task: DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) One-against-rest AUROC for IMR90 accessible elements. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.929 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned Caduceus), column(CTS-IMR90) Source checking is not independent reproduction. |
| Caduceus (fine-tuned) on DART-Eval CTS-K562: Cell-type-specific element classification, K562 Configuration: Caduceus (fine-tuned)Task: DART-Eval CTS-K562: Cell-type-specific element classification, K562Dataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) One-against-rest AUROC for K562 accessible elements. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.878 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 4, row(Fine-Tuned Caduceus), column(CTS-K562) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives Configuration: Caduceus (probed)Task: DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive GM12878 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.605 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-AUROC-GM12878) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives Configuration: Caduceus (probed)Task: DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive H1ESC peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.608 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-AUROC-H1ESC) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives Configuration: Caduceus (probed)Task: DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive HEPG2 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.611 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-AUROC-HEPG2) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives Configuration: Caduceus (probed)Task: DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive IMR90 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.610 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-AUROC-IMR90) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives Configuration: Caduceus (probed)Task: DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negativesDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Separating positive K562 peaks from matched negatives. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.616 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-AUROC-K562) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only Configuration: Caduceus (probed)Task: DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive GM12878 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.251 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-SPEARMAN-GM12878) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only Configuration: Caduceus (probed)Task: DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive H1ESC peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.371 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-SPEARMAN-H1ESC) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only Configuration: Caduceus (probed)Task: DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive HEPG2 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.312 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-SPEARMAN-HEPG2) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: Caduceus (probed)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.149 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of ENCODE chromatin accessibility peaks in five cell lines that DART-Eval evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA No field-specific location recorded Version: 2412.05430v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA No field-specific location recorded Version: 2412.05430v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-dataset-encode-chromatin-accessibility-peaks-in-five-cell-lines
- areas
- dna-genomes
- missing metadata
- version: unreported; url: unextracted
Related records
- dataset: Caduceus (fine-tuned) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: Caduceus (fine-tuned) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: Caduceus (fine-tuned) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: Caduceus (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
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- dataset: Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
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- dataset: DNABERT-2 (fine-tuned) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: DNABERT-2 (fine-tuned) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: DNABERT-2 (fine-tuned) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: DNABERT-2 (fine-tuned) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: DNABERT-2 (fine-tuned) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: DNABERT-2 (fine-tuned) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: DNABERT-2 (fine-tuned) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: DNABERT-2 (probed) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: DNABERT-2 (probed) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: DNABERT-2 (probed) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: DNABERT-2 (probed) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: DNABERT-2 (probed) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: DNABERT-2 (probed) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: DNABERT-2 (probed) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: DNABERT-2 (probed) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: DNABERT-2 (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: DNABERT-2 (probed) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: DNABERT-2 (probed) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: DNABERT-2 (probed) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: DNABERT-2 (probed) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: DNABERT-2 (probed) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: DNABERT-2 (probed) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: DNABERT-2 (probed) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: GENA-LM (fine-tuned) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: GENA-LM (fine-tuned) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: GENA-LM (fine-tuned) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: GENA-LM (fine-tuned) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: GENA-LM (fine-tuned) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: GENA-LM (fine-tuned) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: GENA-LM (probed) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: GENA-LM (probed) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: GENA-LM (probed) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: GENA-LM (probed) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: GENA-LM (probed) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: GENA-LM (probed) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: GENA-LM (probed) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: GENA-LM (probed) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: GENA-LM (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: GENA-LM (probed) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: GENA-LM (probed) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: GENA-LM (probed) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: GENA-LM (probed) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: GENA-LM (probed) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: GENA-LM (probed) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: GENA-LM (probed) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: HyenaDNA (fine-tuned) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: HyenaDNA (fine-tuned) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: HyenaDNA (fine-tuned) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: HyenaDNA (fine-tuned) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: HyenaDNA (fine-tuned) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: HyenaDNA (fine-tuned) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: HyenaDNA (fine-tuned) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: HyenaDNA (probed) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: HyenaDNA (probed) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: HyenaDNA (probed) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: HyenaDNA (probed) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: HyenaDNA (probed) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: HyenaDNA (probed) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: HyenaDNA (probed) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: HyenaDNA (probed) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: HyenaDNA (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: HyenaDNA (probed) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: HyenaDNA (probed) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: HyenaDNA (probed) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: HyenaDNA (probed) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: HyenaDNA (probed) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: HyenaDNA (probed) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: HyenaDNA (probed) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: Mistral-DNA (fine-tuned) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: Mistral-DNA (probed) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: Mistral-DNA (probed) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: Mistral-DNA (probed) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: Mistral-DNA (probed) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: Mistral-DNA (probed) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: Mistral-DNA (probed) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: Mistral-DNA (probed) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: Mistral-DNA (probed) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: Mistral-DNA (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: Mistral-DNA (probed) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: Mistral-DNA (probed) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: Mistral-DNA (probed) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: Mistral-DNA (probed) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: Mistral-DNA (probed) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: Mistral-DNA (probed) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: Mistral-DNA (probed) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: Nucleotide Transformer (fine-tuned) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-AUROC-GM12878: Chromatin activity prediction, GM12878, positives against negatives
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-AUROC-H1ESC: Chromatin activity prediction, H1ESC, positives against negatives
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-AUROC-HEPG2: Chromatin activity prediction, HEPG2, positives against negatives
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-AUROC-IMR90: Chromatin activity prediction, IMR90, positives against negatives
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-AUROC-K562: Chromatin activity prediction, K562, positives against negatives
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-GM12878: Chromatin activity prediction, GM12878, positives only
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-HEPG2: Chromatin activity prediction, HEPG2, positives only
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- dataset: Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- dataset: Nucleotide Transformer (probed) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: Nucleotide Transformer (probed) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: Nucleotide Transformer (probed) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: Nucleotide Transformer (probed) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: Nucleotide Transformer (probed) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: Nucleotide Transformer (probed) on DART-Eval CTS-K562: Cell-type-specific element classification, K562
- dataset: Probing-head-like (ab initio) on DART-Eval CTS-ACC: Cell-type-specific element classification, overall accuracy
- dataset: Probing-head-like (ab initio) on DART-Eval CTS-GM12878: Cell-type-specific element classification, GM12878
- dataset: Probing-head-like (ab initio) on DART-Eval CTS-H1ESC: Cell-type-specific element classification, H1ESC
- dataset: Probing-head-like (ab initio) on DART-Eval CTS-HEPG2: Cell-type-specific element classification, HEPG2
- dataset: Probing-head-like (ab initio) on DART-Eval CTS-IMR90: Cell-type-specific element classification, IMR90
- dataset: Probing-head-like (ab initio) on DART-Eval CTS-K562: Cell-type-specific element classification, K562