DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
Chromatin activity prediction, IMR90, positives only. Scored with Spearman r on ENCODE chromatin accessibility peaks in five cell lines. Rank correlation with measured accessibility among positive IMR90 peaks.
Overview
Chromatin activity prediction, IMR90, positives only. Scored with Spearman r on ENCODE chromatin accessibility peaks in five cell lines. Rank correlation with measured accessibility among positive IMR90 peaks.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- Caduceus (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- ChromBPNet (ab initio) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- DNABERT-2 (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- DNABERT-2 (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- GENA-LM (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- HyenaDNA (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- HyenaDNA (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- Mistral-DNA (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- Mistral-DNA (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- Nucleotide Transformer (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
spearman_r (fraction) · Higher values are better for this metric.
Every method DART-Eval reports on Chromatin activity prediction, IMR90, positives only, scored with Spearman r on ENCODE chromatin accessibility peaks in five cell lines.
Evaluation protocol · ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
- Caduceus (probed) · Configuration · Author-reported evaluation0.149
- DNABERT-2 (probed) · Configuration · Author-reported evaluation0.275
- GENA-LM (probed) · Configuration · Author-reported evaluation0.329
- HyenaDNA (probed) · Configuration · Author-reported evaluation0.237
- Mistral-DNA (probed) · Configuration · Author-reported evaluation0.244
- Nucleotide Transformer (probed) · Configuration · Author-reported evaluation0.270
- Caduceus (fine-tuned) · Configuration · Author-reported evaluation0.479
- DNABERT-2 (fine-tuned) · Configuration · Author-reported evaluation0.470
- GENA-LM (fine-tuned) · Configuration · Author-reported evaluation0.421
- HyenaDNA (fine-tuned) · Configuration · Author-reported evaluation0.426
- Mistral-DNA (fine-tuned) · Configuration · Author-reported evaluation0.302
- Nucleotide Transformer (fine-tuned) · Configuration · Author-reported evaluation0.489
- ChromBPNet (ab initio) · Method · Author-reported evaluation0.549
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, column(Spearman r IMR90)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| Caduceus (probed) · Configuration | 0.149 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-SPEARMAN-IMR90) |
| DNABERT-2 (probed) · Configuration | 0.275 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed DNABERT-2), column(CA-SPEARMAN-IMR90) |
| GENA-LM (probed) · Configuration | 0.329 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed GENA-LM), column(CA-SPEARMAN-IMR90) |
| HyenaDNA (probed) · Configuration | 0.237 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed HyenaDNA), column(CA-SPEARMAN-IMR90) |
| Mistral-DNA (probed) · Configuration | 0.244 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Mistral-DNA), column(CA-SPEARMAN-IMR90) |
| Nucleotide Transformer (probed) · Configuration | 0.270 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed NT), column(CA-SPEARMAN-IMR90) |
| Caduceus (fine-tuned) · Configuration | 0.479 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-SPEARMAN-IMR90) |
| DNABERT-2 (fine-tuned) · Configuration | 0.470 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned DNABERT-2), column(CA-SPEARMAN-IMR90) |
| GENA-LM (fine-tuned) · Configuration | 0.421 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-SPEARMAN-IMR90) |
| HyenaDNA (fine-tuned) · Configuration | 0.426 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned HyenaDNA), column(CA-SPEARMAN-IMR90) |
| Mistral-DNA (fine-tuned) · Configuration | 0.302 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Mistral-DNA), column(CA-SPEARMAN-IMR90) |
| Nucleotide Transformer (fine-tuned) · Configuration | 0.489 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned NT), column(CA-SPEARMAN-IMR90) |
| ChromBPNet (ab initio) · Method | 0.549 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Ab initio ChromBPNet), column(CA-SPEARMAN-IMR90) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- The evaluation setting is part of the method name: a zero-shot, probed and fine-tuned run of the same model are different entries.
- Metrics and datasets differ between tasks, so these figures cannot be averaged into one score.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 13 evaluations · 13 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: Caduceus (fine-tuned)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.479 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Caduceus), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: Caduceus (probed)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.149 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Caduceus), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| ChromBPNet (ab initio) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Method: ChromBPNet (ab initio)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.549 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Ab initio ChromBPNet), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| DNABERT-2 (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: DNABERT-2 (fine-tuned)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.470 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned DNABERT-2), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| DNABERT-2 (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: DNABERT-2 (probed)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.275 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed DNABERT-2), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: GENA-LM (fine-tuned)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.421 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned GENA-LM), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| GENA-LM (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: GENA-LM (probed)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.329 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed GENA-LM), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| HyenaDNA (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: HyenaDNA (fine-tuned)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.426 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned HyenaDNA), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| HyenaDNA (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: HyenaDNA (probed)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.237 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed HyenaDNA), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| Mistral-DNA (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: Mistral-DNA (fine-tuned)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.302 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned Mistral-DNA), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| Mistral-DNA (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: Mistral-DNA (probed)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.244 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed Mistral-DNA), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| Nucleotide Transformer (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: Nucleotide Transformer (fine-tuned)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.489 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Fine-Tuned NT), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
| Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only Configuration: Nucleotide Transformer (probed)Task: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive IMR90 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.270 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed NT), column(CA-SPEARMAN-IMR90) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-dart-eval Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, column(Spearman r IMR90) Version: 2412.05430v1 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: dart-eval-association-ca-spearman-imr90 Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-task-ca-spearman-imr90
- areas
- dna-genomes
- tasks
- Chromatin activity prediction, IMR90, positives only
- metric
- Spearman r
- metric direction
- higher
- dataset
- ENCODE chromatin accessibility peaks in five cell lines
- protocol
- Rank correlation with measured accessibility among positive IMR90 peaks.
- source locator
- Table 5, column(Spearman r IMR90)
- comparison panels
- id: dart-eval-panel-ca-spearman-imr90; title: DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only; protocol id: dart-eval-task-ca-spearman-imr90; dataset id: dart-eval-dataset-encode-chromatin-accessibility-peaks-in-five-cell-lines; metric: spearman_r; unit: fraction; direction: higher; result ids: dart-eval-result-caduceus-probed-ca-spearman-imr90-spearman-r; dart-eval-result-dnabert-2-probed-ca-spearman-imr90-spearman-r; dart-eval-result-gena-lm-probed-ca-spearman-imr90-spearman-r; dart-eval-result-hyenadna-probed-ca-spearman-imr90-spearman-r; dart-eval-result-mistral-dna-probed-ca-spearman-imr90-spearman-r; dart-eval-result-nucleotide-transformer-probed-ca-spearman-imr90-spearman-r; dart-eval-result-caduceus-fine-tuned-ca-spearman-imr90-spearman-r; dart-eval-result-dnabert-2-fine-tuned-ca-spearman-imr90-spearman-r; dart-eval-result-gena-lm-fine-tuned-ca-spearman-imr90-spearman-r; dart-eval-result-hyenadna-fine-tuned-ca-spearman-imr90-spearman-r; dart-eval-result-mistral-dna-fine-tuned-ca-spearman-imr90-spearman-r; dart-eval-result-nucleotide-transformer-fine-tuned-ca-spearman-imr90-spearman-r; dart-eval-result-chrombpnet-ab-initio-ca-spearman-imr90-spearman-r; source ids: evidence-expansion-p2-evidence-discovery-final-dart-4194b137ba55; source locator: Table 5, column(Spearman r IMR90); context: Every method DART-Eval reports on Chromatin activity prediction, IMR90, positives only, scored with Spearman r on ENCODE chromatin accessibility peaks in five cell lines.; caveats: Author-reported numbers, source checked but not independently reproduced.; The evaluation setting is part of the method name: a zero-shot, probed and fine-tuned run of the same model are different entries.; Metrics and datasets differ between tasks, so these figures cannot be averaged into one score.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: DART-Eval
- subject: DART-Eval CA-SPEARMAN-IMR90: part of discovery-benchmark-dart-eval
- benchmark: Caduceus (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: Caduceus (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: ChromBPNet (ab initio) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: DNABERT-2 (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: DNABERT-2 (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: GENA-LM (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: GENA-LM (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: HyenaDNA (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: HyenaDNA (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: Mistral-DNA (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: Mistral-DNA (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: Nucleotide Transformer (fine-tuned) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only
- benchmark: Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-IMR90: Chromatin activity prediction, IMR90, positives only