Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
DART-Eval evaluation of Nucleotide Transformer (probed) on Chromatin activity prediction, K562, positives only, scored with Spearman r.
Methods and reproduction
DART-Eval evaluation of Nucleotide Transformer (probed) on Chromatin activity prediction, K562, positives only, scored with Spearman r.
- task
- DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- configuration
- Nucleotide Transformer (probed)
- dataset subset
- ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Spearman r
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Rank correlation with measured accessibility among positive K562 peaks.
- Configuration
- Nucleotide Transformer (probed)
- Task
- DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only
- Dataset subset
- ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- dart-eval-task-ca-spearman-k562
- metric implementation
- Spearman r
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only Configuration: Nucleotide Transformer (probed)Task: DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive K562 peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.499 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation Spearman r Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id dart-eval-task-ca-spearman-k562 Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Rank correlation with measured accessibility among positive K562 peaks. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description DART-Eval evaluation of Nucleotide Transformer (probed) on Chromatin activity prediction, K562, positives only, scored with Spearman r. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark dart-eval-task-ca-spearman-k562 Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset dart-eval-dataset-encode-chromatin-accessibility-peaks-in-five-cell-lines Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model dart-eval-method-nucleotide-transformer-probed Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-K562: Chromatin activity prediction, K562, positives only Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-K562) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-evaluation-nucleotide-transformer-probed-ca-spearman-k562
- areas
- dna-genomes
- tasks
- Chromatin activity prediction, K562, positives only
- origin
- author_reported
- protocol
- Rank correlation with measured accessibility among positive K562 peaks.
- comparison
- protocol id: dart-eval-task-ca-spearman-k562; metric implementation: Spearman r
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 5, row(Probed NT), column(CA-SPEARMAN-K562)