Nucleotide Transformer (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
DART-Eval evaluation of Nucleotide Transformer (zero-shot embedding) on Variant scoring on Chromatin QTLs in African LCLs, AUROC, scored with AUROC.
Methods and reproduction
DART-Eval evaluation of Nucleotide Transformer (zero-shot embedding) on Variant scoring on Chromatin QTLs in African LCLs, AUROC, scored with AUROC.
- task
- DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- configuration
- Nucleotide Transformer (zero-shot embedding)
- dataset subset
- Chromatin QTLs in African LCLs (DART-Eval split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- AUROC
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Score the effect of a variant on chromatin accessibility, against the measured QTL call.
- Configuration
- Nucleotide Transformer (zero-shot embedding)
- Task
- DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- Dataset subset
- Chromatin QTLs in African LCLs (DART-Eval split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- dart-eval-task-vs-african-auroc
- metric implementation
- AUROC
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Nucleotide Transformer (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Nucleotide Transformer (zero-shot embedding)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.519 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African NT), column(zero-shot embedding auroc) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation AUROC Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id dart-eval-task-vs-african-auroc Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Score the effect of a variant on chromatin accessibility, against the measured QTL call. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 6, row(African NT), column(zero-shot embedding auroc) Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description DART-Eval evaluation of Nucleotide Transformer (zero-shot embedding) on Variant scoring on Chromatin QTLs in African LCLs, AUROC, scored with AUROC. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark dart-eval-task-vs-african-auroc Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset dart-eval-dataset-chromatin-qtls-in-african-lcls Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model dart-eval-method-nucleotide-transformer-zero-shot-embedding Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Nucleotide Transformer (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row(African NT), column(zero-shot embedding auroc) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-evaluation-nucleotide-transformer-zero-shot-embedding-vs-african-auroc
- areas
- dna-genomes
- tasks
- Variant scoring on Chromatin QTLs in African LCLs, AUROC
- origin
- author_reported
- protocol
- Score the effect of a variant on chromatin accessibility, against the measured QTL call.
- comparison
- protocol id: dart-eval-task-vs-african-auroc; metric implementation: AUROC
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 6, row(African NT), column(zero-shot embedding auroc)