DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
Variant scoring on Chromatin QTLs in African LCLs, AUROC. Scored with AUROC on Chromatin QTLs in African LCLs. Score the effect of a variant on chromatin accessibility, against the measured QTL call.
Overview
Variant scoring on Chromatin QTLs in African LCLs, AUROC. Scored with AUROC on Chromatin QTLs in African LCLs. Score the effect of a variant on chromatin accessibility, against the measured QTL call.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- Caduceus (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- Caduceus (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- Caduceus (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- Caduceus (zero-shot likelihood) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- ChromBPNet (ab initio) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- DNABERT-2 (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- DNABERT-2 (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- DNABERT-2 (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- GENA-LM (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- GENA-LM (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- GENA-LM (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- HyenaDNA (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
auroc (fraction) · Higher values are better for this metric.
Every method DART-Eval reports on Variant scoring on Chromatin QTLs in African LCLs, AUROC, scored with AUROC on Chromatin QTLs in African LCLs.
Evaluation protocol · Chromatin QTLs in African LCLs (DART-Eval split)
- Caduceus (zero-shot likelihood) · Configuration · Author-reported evaluation0.525
- Caduceus (zero-shot embedding) · Configuration · Author-reported evaluation0.519
- Caduceus (probed) · Configuration · Author-reported evaluation0.512
- Caduceus (fine-tuned) · Configuration · Author-reported evaluation0.650
- DNABERT-2 (zero-shot embedding) · Configuration · Author-reported evaluation0.480
- DNABERT-2 (probed) · Configuration · Author-reported evaluation0.502
- DNABERT-2 (fine-tuned) · Configuration · Author-reported evaluation0.616
- GENA-LM (zero-shot embedding) · Configuration · Author-reported evaluation0.508
- GENA-LM (probed) · Configuration · Author-reported evaluation0.515
- GENA-LM (fine-tuned) · Configuration · Author-reported evaluation0.604
- HyenaDNA (zero-shot likelihood) · Configuration · Author-reported evaluation0.486
- HyenaDNA (zero-shot embedding) · Configuration · Author-reported evaluation0.515
- HyenaDNA (probed) · Configuration · Author-reported evaluation0.566
- HyenaDNA (fine-tuned) · Configuration · Author-reported evaluation0.611
- Mistral-DNA (zero-shot embedding) · Configuration · Author-reported evaluation0.520
- Mistral-DNA (probed) · Configuration · Author-reported evaluation0.502
- Mistral-DNA (fine-tuned) · Configuration · Author-reported evaluation0.510
- Nucleotide Transformer (zero-shot likelihood) · Configuration · Author-reported evaluation0.525
- Nucleotide Transformer (zero-shot embedding) · Configuration · Author-reported evaluation0.519
- Nucleotide Transformer (probed) · Configuration · Author-reported evaluation0.525
- Nucleotide Transformer (fine-tuned) · Configuration · Author-reported evaluation0.623
- ChromBPNet (ab initio) · Method · Author-reported evaluation0.772
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row group(AFRICAN), column(AUROC)Values, uncertainty and evidence
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- The evaluation setting is part of the method name: a zero-shot, probed and fine-tuned run of the same model are different entries.
- Metrics and datasets differ between tasks, so these figures cannot be averaged into one score.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 22 evaluations · 22 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Caduceus (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Caduceus (fine-tuned)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.650 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African Caduceus), column(fine-tuned auroc) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Caduceus (probed)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.512 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African Caduceus), column(probed auroc) Source checking is not independent reproduction. |
| Caduceus (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Caduceus (zero-shot embedding)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.519 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African Caduceus), column(zero-shot embedding auroc) Source checking is not independent reproduction. |
| Caduceus (zero-shot likelihood) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Caduceus (zero-shot likelihood)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.525 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African Caduceus), column(zero-shot likelihood auroc) Source checking is not independent reproduction. |
| ChromBPNet (ab initio) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Method: ChromBPNet (ab initio)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.772 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African ChromBPNet), column(ab initio auroc) Source checking is not independent reproduction. |
| DNABERT-2 (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: DNABERT-2 (fine-tuned)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.616 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African DNABERT-2), column(fine-tuned auroc) Source checking is not independent reproduction. |
| DNABERT-2 (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: DNABERT-2 (probed)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.502 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African DNABERT-2), column(probed auroc) Source checking is not independent reproduction. |
| DNABERT-2 (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: DNABERT-2 (zero-shot embedding)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.480 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African DNABERT-2), column(zero-shot embedding auroc) Source checking is not independent reproduction. |
| GENA-LM (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: GENA-LM (fine-tuned)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.604 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African GENA-LM), column(fine-tuned auroc) Source checking is not independent reproduction. |
| GENA-LM (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: GENA-LM (probed)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.515 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African GENA-LM), column(probed auroc) Source checking is not independent reproduction. |
| GENA-LM (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: GENA-LM (zero-shot embedding)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.508 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African GENA-LM), column(zero-shot embedding auroc) Source checking is not independent reproduction. |
| HyenaDNA (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: HyenaDNA (fine-tuned)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.611 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African HyenaDNA), column(fine-tuned auroc) Source checking is not independent reproduction. |
| HyenaDNA (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: HyenaDNA (probed)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.566 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African HyenaDNA), column(probed auroc) Source checking is not independent reproduction. |
| HyenaDNA (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: HyenaDNA (zero-shot embedding)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.515 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African HyenaDNA), column(zero-shot embedding auroc) Source checking is not independent reproduction. |
| HyenaDNA (zero-shot likelihood) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: HyenaDNA (zero-shot likelihood)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.486 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African HyenaDNA), column(zero-shot likelihood auroc) Source checking is not independent reproduction. |
| Mistral-DNA (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Mistral-DNA (fine-tuned)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.510 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African Mistral-DNA), column(fine-tuned auroc) Source checking is not independent reproduction. |
| Mistral-DNA (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Mistral-DNA (probed)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.502 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African Mistral-DNA), column(probed auroc) Source checking is not independent reproduction. |
| Mistral-DNA (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Mistral-DNA (zero-shot embedding)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.520 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African Mistral-DNA), column(zero-shot embedding auroc) Source checking is not independent reproduction. |
| Nucleotide Transformer (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Nucleotide Transformer (fine-tuned)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.623 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African NT), column(fine-tuned auroc) Source checking is not independent reproduction. |
| Nucleotide Transformer (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Nucleotide Transformer (probed)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.525 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African NT), column(probed auroc) Source checking is not independent reproduction. |
| Nucleotide Transformer (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Nucleotide Transformer (zero-shot embedding)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.519 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African NT), column(zero-shot embedding auroc) Source checking is not independent reproduction. |
| Nucleotide Transformer (zero-shot likelihood) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC Configuration: Nucleotide Transformer (zero-shot likelihood)Task: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROCDataset subset: Chromatin QTLs in African LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.525 auroc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(African NT), column(zero-shot likelihood auroc) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-dart-eval Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row group(AFRICAN), column(AUROC) Version: 2412.05430v1 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: dart-eval-association-vs-african-auroc Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-task-vs-african-auroc
- areas
- dna-genomes
- tasks
- Variant scoring on Chromatin QTLs in African LCLs, AUROC
- metric
- AUROC
- metric direction
- higher
- dataset
- Chromatin QTLs in African LCLs
- protocol
- Score the effect of a variant on chromatin accessibility, against the measured QTL call.
- source locator
- Table 6, row group(AFRICAN), column(AUROC)
- comparison panels
- id: dart-eval-panel-vs-african-auroc; title: DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC; protocol id: dart-eval-task-vs-african-auroc; dataset id: dart-eval-dataset-chromatin-qtls-in-african-lcls; metric: auroc; unit: fraction; direction: higher; result ids: dart-eval-result-caduceus-zero-shot-likelihood-vs-african-auroc-auroc; dart-eval-result-caduceus-zero-shot-embedding-vs-african-auroc-auroc; dart-eval-result-caduceus-probed-vs-african-auroc-auroc; dart-eval-result-caduceus-fine-tuned-vs-african-auroc-auroc; dart-eval-result-dnabert-2-zero-shot-embedding-vs-african-auroc-auroc; dart-eval-result-dnabert-2-probed-vs-african-auroc-auroc; dart-eval-result-dnabert-2-fine-tuned-vs-african-auroc-auroc; dart-eval-result-gena-lm-zero-shot-embedding-vs-african-auroc-auroc; dart-eval-result-gena-lm-probed-vs-african-auroc-auroc; dart-eval-result-gena-lm-fine-tuned-vs-african-auroc-auroc; dart-eval-result-hyenadna-zero-shot-likelihood-vs-african-auroc-auroc; dart-eval-result-hyenadna-zero-shot-embedding-vs-african-auroc-auroc; dart-eval-result-hyenadna-probed-vs-african-auroc-auroc; dart-eval-result-hyenadna-fine-tuned-vs-african-auroc-auroc; dart-eval-result-mistral-dna-zero-shot-embedding-vs-african-auroc-auroc; dart-eval-result-mistral-dna-probed-vs-african-auroc-auroc; dart-eval-result-mistral-dna-fine-tuned-vs-african-auroc-auroc; dart-eval-result-nucleotide-transformer-zero-shot-likelihood-vs-african-auroc-auroc; dart-eval-result-nucleotide-transformer-zero-shot-embedding-vs-african-auroc-auroc; dart-eval-result-nucleotide-transformer-probed-vs-african-auroc-auroc; dart-eval-result-nucleotide-transformer-fine-tuned-vs-african-auroc-auroc; dart-eval-result-chrombpnet-ab-initio-vs-african-auroc-auroc; source ids: evidence-expansion-p2-evidence-discovery-final-dart-4194b137ba55; source locator: Table 6, row group(AFRICAN), column(AUROC); context: Every method DART-Eval reports on Variant scoring on Chromatin QTLs in African LCLs, AUROC, scored with AUROC on Chromatin QTLs in African LCLs.; caveats: Author-reported numbers, source checked but not independently reproduced.; The evaluation setting is part of the method name: a zero-shot, probed and fine-tuned run of the same model are different entries.; Metrics and datasets differ between tasks, so these figures cannot be averaged into one score.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: DART-Eval
- subject: DART-Eval VS-AFRICAN-AUROC: part of discovery-benchmark-dart-eval
- benchmark: Caduceus (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Caduceus (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Caduceus (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Caduceus (zero-shot likelihood) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: ChromBPNet (ab initio) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: DNABERT-2 (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: DNABERT-2 (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: DNABERT-2 (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: GENA-LM (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: GENA-LM (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: GENA-LM (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: HyenaDNA (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: HyenaDNA (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: HyenaDNA (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: HyenaDNA (zero-shot likelihood) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Mistral-DNA (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Mistral-DNA (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Mistral-DNA (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Nucleotide Transformer (fine-tuned) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Nucleotide Transformer (probed) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Nucleotide Transformer (zero-shot embedding) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC
- benchmark: Nucleotide Transformer (zero-shot likelihood) on DART-Eval VS-AFRICAN-AUROC: Variant scoring on Chromatin QTLs in African LCLs, AUROC