evaluation · needs review
DNABERT-2: regulatory element identification
Evaluation procedure
zero-shot likelihood ranking: higher likelihood for cCRE than matched control
- Model
- DNABERT-2
- Benchmark
- regulatory element identification
- Dataset
- DART-Eval cCREs versus matched shuffled controls
- origin
- Independent external evaluation
- configuration
- not stated in table
- protocol id
- Not reported
- dataset version
- Not reported
- split
- paper evaluation
- population
- Not reported
- inputs
- Not reported
- adaptation
- Not reported
- metric implementation
- Not reported
- aggregation
- Not reported
- budget
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DNABERT-2: regulatory element identification Model: DNABERT-2 · Benchmark: regulatory element identification · Dataset: DART-Eval cCREs versus matched shuffled controls zero-shot likelihood ranking: higher likelihood for cCRE than matched control Independent external evaluation · Evaluation metadata: needs review | ||
| 0.876 accuracy Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3 (PDF page 5), DNABERT-2 row, Zero-Shot Accuracy column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: needs review
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · NeurIPS 2024 Datasets and Benchmarks Track proceedings
Technical metadata and extraction receipts
Stable ID: evaluation-b2-dart-eval-regulatory-2024
- areas
- dna-genomes
- tasks
- regulatory element identification
- origin
- independent_paper
- protocol
- zero-shot likelihood ranking: higher likelihood for cCRE than matched control
- version
- not stated in table
- comparison
- protocol id: Not reported; dataset version: Not reported; split: paper evaluation; population: Not reported; inputs: Not reported; adaptation: Not reported; metric implementation: Not reported; aggregation: Not reported; budget: Not reported
- missing metadata
- dataset version: not_reported_in_legacy_extract