evaluation · needs review
Eco70PromBERT: E. coli sigma70 promoter prediction
Evaluation procedure
BERT-base with 1bp tokenizer; 110 promoters and 108 non-promoters.
- Model
- Eco70PromBERT
- Benchmark
- E. coli sigma70 promoter prediction
- Dataset
- Independent E. coli sigma70 test dataset
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- Not reported
- dataset version
- Not reported
- split
- independent test
- population
- Not reported
- inputs
- Not reported
- adaptation
- Not reported
- metric implementation
- Not reported
- aggregation
- Not reported
- budget
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Eco70PromBERT: E. coli sigma70 promoter prediction Model: Eco70PromBERT · Benchmark: E. coli sigma70 promoter prediction · Dataset: Independent E. coli sigma70 test dataset BERT-base with 1bp tokenizer; 110 promoters and 108 non-promoters. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.91 Promoter-class F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedTSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT · TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: needs review
- TSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT · Original source · version of record
Technical metadata and extraction receipts
Stable ID: evaluation-lit-035
- areas
- microbes-communities
- tasks
- E. coli sigma70 promoter prediction
- origin
- author_reported
- protocol
- BERT-base with 1bp tokenizer; 110 promoters and 108 non-promoters.
- version
- Not reported
- comparison
- protocol id: Not reported; dataset version: Not reported; split: independent test; population: Not reported; inputs: Not reported; adaptation: Not reported; metric implementation: Not reported; aggregation: Not reported; budget: Not reported
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract