result · source checked
0.91 Promoter-class F1
Eco70PromBERT · Promoter-class F1 · Independent E. coli sigma70 test dataset
- Tested model
- Eco70PromBERT
- Task or benchmark
- E. coli sigma70 promoter prediction
- Dataset
- Independent E. coli sigma70 test dataset
- Procedure
- BERT-base with 1bp tokenizer; 110 promoters and 108 non-promoters.
- Evaluation
- Eco70PromBERT: E. coli sigma70 promoter prediction
- Evidence
- Author-reported evaluation · source checkedTSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT · TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Eco70PromBERT: E. coli sigma70 promoter prediction Model: Eco70PromBERT · Benchmark: E. coli sigma70 promoter prediction · Dataset: Independent E. coli sigma70 test dataset BERT-base with 1bp tokenizer; 110 promoters and 108 non-promoters. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.91 Promoter-class F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedTSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT · TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- TSSNote-CyaPromBERT: Development of an integrated platform for highly accurate promoter prediction and visualization of Synechococcus sp. and Synechocystis sp. through a state-of-the-art natural language processing model BERT · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-035
- areas
- microbes-communities
- tasks
- E. coli sigma70 promoter prediction
- printed value
- 0.91
- numeric value
- 0.91
- metric
- Promoter-class F1
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.544033+00:00; notes: F1 score is the third two-column group; selected Promoter subcolumn, not AUROC or precision. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "T3", "row_cells": ["Eco70PromBERT (BERT-base + 1bp tokenizer)", "0.92", "0.90", "0.91", "0.91", "0.91", "0.91", "110", "108"], "selected_cell_zero_based": 5, "selected_cell_xml": "<td align=\"left\" rowspan=\"1\" colspan=\"1\">0.91</td>", "caption": "Performance of Eco70PromBERT and popular promoter prediction models for E.coli using an independent dataset (σ70 promoters and non-promoters)."}; artifact sha256: 74278ccd77b2bc00a3f4434546545e8bdec8b0652a0e5d1862ec0f91decccd8d; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC9745317/fullTextXML
- legacy id
- lit-035
- legacy row
- id: lit-035; paper id: cyaprombert-2022; domain id: microbes-communities; task: E. coli sigma70 promoter prediction; model: Eco70PromBERT; model version: Not reported; dataset: Independent E. coli sigma70 test dataset; dataset version: Not reported; split: independent test; metric: Promoter-class F1; value: 0.91; unit: unitless; uncertainty: Not reported; protocol: BERT-base with 1bp tokenizer; 110 promoters and 108 non-promoters.; source locator: TABLE 3, Eco70PromBERT (BERT-base + 1bp tokenizer) row, F1 score Promoter column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC9745317/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:25:00Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract