evaluation · needs review
Kraken2: Strain-level abundance quantification
Evaluation procedure
Strain-level quantification on the HumanGut-all synthetic query.
- Model
- Kraken2
- Benchmark
- Strain-level abundance quantification
- Dataset
- HumanGut-all strain-level query
- origin
- Independent external evaluation
- configuration
- Not reported
- protocol id
- Not reported
- dataset version
- Not reported
- split
- Not reported
- population
- Not reported
- inputs
- Not reported
- adaptation
- Not reported
- metric implementation
- Not reported
- aggregation
- Not reported
- budget
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Kraken2: Strain-level abundance quantification Model: Kraken2 · Benchmark: Strain-level abundance quantification · Dataset: HumanGut-all strain-level query Strain-level quantification on the HumanGut-all synthetic query. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.2841 L1 abundance error Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedStrain level microbial detection and quantification with applications to single cell metagenomics · Table 5, B. L1 Err. / HumanGut-all row, Kraken2 L1 Err. column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: needs review
- Strain level microbial detection and quantification with applications to single cell metagenomics · Original source · version of record
Technical metadata and extraction receipts
Stable ID: evaluation-lit-b3-020
- areas
- microbes-communities
- tasks
- Strain-level abundance quantification
- origin
- independent_paper
- protocol
- Strain-level quantification on the HumanGut-all synthetic query.
- version
- Not reported
- comparison
- protocol id: Not reported; dataset version: Not reported; split: Not reported; population: Not reported; inputs: Not reported; adaptation: Not reported; metric implementation: Not reported; aggregation: Not reported; budget: Not reported
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract
Related records
- model: Kraken2
- benchmark: Strain-level abundance quantification
- dataset: HumanGut-all strain-level query
- evaluation: Kraken2 · L1 abundance error · HumanGut-all strain-level query