HumanGut-all strain-level query
Evaluation results
Release 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| CAMMiQ: Strain-level abundance quantification Model: CAMMiQ · Benchmark: Strain-level abundance quantification · Dataset: HumanGut-all strain-level query Strain-level quantification on the HumanGut-all synthetic query. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.0517 L1 abundance error Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedStrain level microbial detection and quantification with applications to single cell metagenomics · Table 5, B. L1 Err. / HumanGut-all row, CAMMiQ L1 Err. column Source checking is not independent reproduction. |
| Kraken2: Strain-level abundance quantification Model: Kraken2 · Benchmark: Strain-level abundance quantification · Dataset: HumanGut-all strain-level query Strain-level quantification on the HumanGut-all synthetic query. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.2841 L1 abundance error Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedStrain level microbial detection and quantification with applications to single cell metagenomics · Table 5, B. L1 Err. / HumanGut-all row, Kraken2 L1 Err. column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: needs review
- Strain level microbial detection and quantification with applications to single cell metagenomics · Original source · version of record
Technical metadata and extraction receipts
Stable ID: reported-dataset-72e837e5b97041
- areas
- microbes-communities
- version
- Not reported
- split
- Not reported
- missing metadata
- version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; accession: not_reported_in_legacy_extract