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0.0517 L1 abundance error

CAMMiQ · L1 abundance error · HumanGut-all strain-level query

Tested model
CAMMiQ
Task or benchmark
Strain-level abundance quantification
Dataset
HumanGut-all strain-level query
Procedure
Strain-level quantification on the HumanGut-all synthetic query.
Evaluation
CAMMiQ: Strain-level abundance quantification
Evidence
Author-reported evaluation · source checkedStrain level microbial detection and quantification with applications to single cell metagenomics · Table 5, B. L1 Err. / HumanGut-all row, CAMMiQ L1 Err. column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
CAMMiQ: Strain-level abundance quantification
Model: CAMMiQ · Benchmark: Strain-level abundance quantification · Dataset: HumanGut-all strain-level query

Strain-level quantification on the HumanGut-all synthetic query.

Author-reported evaluation · Evaluation metadata: needs review

0.0517 L1 abundance error

Unit: unitless · Direction: unknown

Uncertainty: not reported in legacy extract

Scored: Not reported · Eligible: Not reported

source checkedStrain level microbial detection and quantification with applications to single cell metagenomics · Table 5, B. L1 Err. / HumanGut-all row, CAMMiQ L1 Err. column

Source checking is not independent reproduction.

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: lit-b3-019

areas
microbes-communities
tasks
Strain-level abundance quantification
printed value
0.0517
numeric value
0.0517
metric
L1 abundance error
metric direction
unknown
unit
unitless
uncertainty
Not reported
source locator
Table 5, B. L1 Err. / HumanGut-all row, CAMMiQ L1 Err. column
review
method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.408237+00:00; notes: HumanGut-all in B. L1 Err. block (second occurrence), not strain count or C. L2 Err. Numbers are errors; lower is better. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "Tab5", "row_cells": ["", "HumanGut-all", "0.0517", "0.2841", "0.2426", "0.4004", "0.2811", "0.4439"], "selected_cell_zero_based": 2, "selected_cell_xml": "<td colspan=\"1\" rowspan=\"1\">0.0517</td>", "caption": "CAMMiQ’s strain level performance compared to Kraken2, KrakenUniq, CLARK, Centrifuge, and MetaPhlAn2, on the four strain-level queries"}; artifact sha256: f0939647ed3de995d58254f79472a612c21b0e1b2560a82783302aa1a148dde3; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC9616933/fullTextXML
legacy id
lit-b3-019
legacy row
id: lit-b3-019; paper id: cammiq-2022; domain id: microbes-communities; task: Strain-level abundance quantification; model: CAMMiQ; model version: Not reported; dataset: HumanGut-all strain-level query; dataset version: Not reported; split: Not reported; metric: L1 abundance error; value: 0.0517; unit: unitless; uncertainty: Not reported; protocol: Strain-level quantification on the HumanGut-all synthetic query.; source locator: Table 5, B. L1 Err. / HumanGut-all row, CAMMiQ L1 Err. column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC9616933/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:29:32Z
missing metadata
model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
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