Orthrus on MIMIC mRNABench probes RNA Half Life: RNA Half Life prediction
MIMIC mRNABench probes evaluation of Orthrus on RNA Half Life prediction, scored with Pearson correlation.
Evaluation results
1 evaluation · 1 metric rows. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Pipeline: Orthrus | Protocol: MIMIC mRNABench probes RNA Half Life: RNA Half Life prediction Dataset subset: mRNABench RNA Half Life as reported in MIMIC Table S11 (MIMIC mRNABench probes split) | 0.696 pearson_r correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Result quoted from another source · source checkedMethods, coverage and sourceOrthrus on MIMIC mRNABench probes RNA Half Life: RNA Half Life prediction MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Aggregation: Not reported MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) |
Source checking is not independent reproduction. Release 2026-09-23-2b89723c6dd9.
Evaluation procedure
MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
- Pipeline
- Orthrus
- Protocol
- MIMIC mRNABench probes RNA Half Life: RNA Half Life prediction
- Dataset subset
- mRNABench RNA Half Life as reported in MIMIC Table S11 (MIMIC mRNABench probes split)
- origin
- Result quoted from another source
- configuration
- Not reported
- protocol id
- mimic-2026-mrnabench-task-rna-half-life
- metric implementation
- Pearson correlation
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Reproduction
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Pearson correlation
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
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Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
14 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.adaptation MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.metric_implementation Pearson correlation Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.protocol_id mimic-2026-mrnabench-task-rna-half-life Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.evidence_overlap MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.origin paper_compilation Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.protocol MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.published_score_reproduction false Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.suite_complete false Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description MIMIC mRNABench probes evaluation of Orthrus on RNA Half Life prediction, scored with Pearson correlation. Context-only references | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life) Version: arXiv version 1 | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- MIMIC v1: Table S11 and Appendix D.3 · Original source · arXiv version 1
Technical metadata and extraction receipts
Stable ID: mimic-2026-mrnabench-evaluation-orthrus-rna-half-life
- areas
- molecular-omics
- tasks
- RNA Half Life prediction
- origin
- paper_compilation
- protocol
- MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
- comparison
- protocol id: mimic-2026-mrnabench-task-rna-half-life; metric implementation: Pearson correlation
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table S11 (HTML A4.T11), data row 10 (Orthrus [ 74 ]), column 8 (RNA Half Life)
- adaptation
- MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
- evidence overlap
- MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments.
- published score reproduction
- false
- suite complete
- false