Evaluation

TAPE Transformer: SCOP1.75 fold-level test

Held-out evolutionary groups; fold-level classification into 1,195 folds

Evaluation procedure

Held-out evolutionary groups; fold-level classification into 1,195 folds

Model: TAPE Transformer
Task: TAPE Remote Homology Detection
Dataset: SCOP1.75 fold-level test

origin: Author-reported evaluation
configuration: Self-supervised pretraining; original TAPE paper task-specific supervised head
protocol id: discovery-benchmark-tape-remote-homology-detection
dataset version: Not reported
split: Held-out evolutionary groups; fold-level classification into 1,195 folds
subset: Not reported
population: count: 718; unit: protein domains
aggregation: Not reported
inputs: Not reported
adaptation: Self-supervised pretraining; original TAPE paper task-specific supervised head
budget: Not reported
metric implementation: Not reported

Metadata review: needs review. Unreported conditions prevent automatic comparisons.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
TAPE Transformer: SCOP1.75 fold-level test Model: TAPE TransformerTask: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.21 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

20 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
attributes.comparison.adaptation Self-supervised pretraining; original TAPE paper task-specific supervised head Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.aggregation No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.budget No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.dataset_version No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.inputs No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.metric_implementation No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.metric_implementation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population.count 718 Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.population.count` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population.unit protein domains Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.population.unit` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.protocol_id discovery-benchmark-tape-remote-homology-detection Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.split Held-out evolutionary groups; fold-level classification into 1,195 folds Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: needs review

tape primary benchmark evidence · Original source · 1906.08230v1

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Technical metadata and extraction receipts

Stable ID: paper-evaluation-2ce8d04bf8853a77fa

areas: protein-function
origin: author_reported
protocol: Held-out evolutionary groups; fold-level classification into 1,195 folds
version: Self-supervised pretraining; original TAPE paper task-specific supervised head
comparison: protocol id: discovery-benchmark-tape-remote-homology-detection; dataset version: Not reported; split: Held-out evolutionary groups; fold-level classification into 1,195 folds; subset: Not reported; population: count: 718; unit: protein domains; aggregation: Not reported; inputs: Not reported; adaptation: Self-supervised pretraining; original TAPE paper task-specific supervised head; budget: Not reported; metric implementation: Not reported
source locator: Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology
missing metadata: checkpoint revision: unextracted; budget: unreported; split manifest: unextracted

Related records

model: TAPE Transformer
benchmark: TAPE Remote Homology Detection
dataset: SCOP1.75 fold-level test
evaluation: Transformer: accuracy on SCOP1.75 fold-level test

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