Dataset

SCOP1.75 fold-level test

Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evaluation results

Release 2026-09-17-d277315f7d76 · 10 evaluations · 10 metric rows. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
TAPE ResNet: SCOP1.75 fold-level test Model: TAPE ResNetTask: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.17 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology Source checking is not independent reproduction.
TAPE Bepler: SCOP1.75 fold-level test Model: TAPE BeplerTask: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.17 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology Source checking is not independent reproduction.
TAPE LSTM: SCOP1.75 fold-level test Model: TAPE LSTMTask: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.26 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology Source checking is not independent reproduction.
TAPE One Hot: SCOP1.75 fold-level test Method: TAPE One HotTask: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.09 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology Source checking is not independent reproduction.
Alignment: SCOP1.75 fold-level test Configuration: AlignmentTask: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.09 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Source checking is not independent reproduction.
Transformer (no pretraining): SCOP1.75 fold-level test Configuration: Transformer (no pretraining)Task: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.09 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row1(No pretraining/Transformer),columnRemote homology Source checking is not independent reproduction.
TAPE Unirep: SCOP1.75 fold-level test Model: TAPE UnirepTask: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Independent external evaluation · Evaluation metadata: needs review
0.23 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology Source checking is not independent reproduction.
LSTM (no pretraining): SCOP1.75 fold-level test Configuration: LSTM (no pretraining)Task: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.12 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row2(No pretraining/LSTM),columnRemote homology Source checking is not independent reproduction.
TAPE Transformer: SCOP1.75 fold-level test Model: TAPE TransformerTask: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.21 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology Source checking is not independent reproduction.
ResNet (no pretraining): SCOP1.75 fold-level test Configuration: ResNet (no pretraining)Task: TAPE Remote Homology DetectionDataset: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Author-reported evaluation · Evaluation metadata: needs review
0.10 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row3(No pretraining/ResNet),columnRemote homology Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

7 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
attributes.reported_population.count 718 Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.reported_population.count` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.reported_population.unit protein domains Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.reported_population.unit` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.source_locator Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.split Held-out evolutionary groups; fold-level classification into 1,195 folds Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.split` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.subset No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded Audit details Field: `attributes.subset` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
name SCOP1.75 fold-level test Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: needs review

tape primary benchmark evidence · Original source · 1906.08230v1

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Technical metadata and extraction receipts

Stable ID: paper-dataset-b84068b24ba74c6f4a

areas: protein-function
split: Held-out evolutionary groups; fold-level classification into 1,195 folds
subset: Not reported
reported population: count: 718; unit: protein domains
source locator: Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology
missing metadata: manifest: unextracted; scored count: unreported
entity classification: review date: 2026-09-17; rationale: This record identifies a biological data collection or source-labelled evaluation cohort. Keep its dataset identity; split, assay, taxonomic level, candidate restrictions and comparison context remain attributes rather than automatically becoming new entity kinds.; source ids: evidence-discovery-final-tape; source locator: Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology; ambiguities: The name suggests a selected cohort, but this record has no verified parent-dataset relationship or independently pinned membership manifest. Retain dataset rather than infer a new parent/subset identity from its name alone.

Related records

dataset: TAPE Unirep: SCOP1.75 fold-level test
dataset: TAPE LSTM: SCOP1.75 fold-level test
dataset: ResNet (no pretraining): SCOP1.75 fold-level test
dataset: TAPE Transformer: SCOP1.75 fold-level test
dataset: Transformer (no pretraining): SCOP1.75 fold-level test
dataset: Alignment: SCOP1.75 fold-level test
dataset: TAPE One Hot: SCOP1.75 fold-level test
dataset: TAPE Bepler: SCOP1.75 fold-level test
dataset: TAPE ResNet: SCOP1.75 fold-level test
dataset: LSTM (no pretraining): SCOP1.75 fold-level test

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