Evaluation

Transformer (no pretraining): CB513

CB513 test set; train/test proteins filtered at 25% sequence identity

Evaluation procedure

CB513 test set; train/test proteins filtered at 25% sequence identity

Configuration: Transformer (no pretraining)
Task: TAPE Secondary Structure
Dataset: CB513

origin: Author-reported evaluation
configuration: No pretraining; original TAPE paper task-specific supervised head
protocol id: discovery-benchmark-tape-secondary-structure
dataset version: Not reported
split: CB513 test set; train/test proteins filtered at 25% sequence identity
subset: Not reported
population: count: 513; unit: proteins; metric counts residues
aggregation: Not reported
inputs: Not reported
adaptation: No pretraining; original TAPE paper task-specific supervised head
budget: Not reported
metric implementation: Not reported

Metadata review: needs review. Unreported conditions prevent automatic comparisons.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
Transformer (no pretraining): CB513 Configuration: Transformer (no pretraining)Task: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.70 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

20 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
attributes.comparison.adaptation No pretraining; original TAPE paper task-specific supervised head Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.adaptation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.aggregation No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.aggregation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.budget No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.budget` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.dataset_version No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.dataset_version` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.inputs No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.inputs` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.metric_implementation No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded author reported Audit details Field: `attributes.comparison.metric_implementation` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population.count 513 Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.population.count` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.population.unit proteins; metric counts residues Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.population.unit` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.protocol_id discovery-benchmark-tape-secondary-structure Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.protocol_id` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.comparison.split CB513 test set; train/test proteins filtered at 25% sequence identity Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded author reported Audit details Field: `attributes.comparison.split` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: needs review

tape primary benchmark evidence · Original source · 1906.08230v1

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Technical metadata and extraction receipts

Stable ID: paper-evaluation-68cf4147660a229478

areas: protein-function
origin: author_reported
protocol: CB513 test set; train/test proteins filtered at 25% sequence identity
version: No pretraining; original TAPE paper task-specific supervised head
comparison: protocol id: discovery-benchmark-tape-secondary-structure; dataset version: Not reported; split: CB513 test set; train/test proteins filtered at 25% sequence identity; subset: Not reported; population: count: 513; unit: proteins; metric counts residues; aggregation: Not reported; inputs: Not reported; adaptation: No pretraining; original TAPE paper task-specific supervised head; budget: Not reported; metric implementation: Not reported
source locator: Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure
missing metadata: checkpoint revision: unextracted; budget: unreported; split manifest: unextracted

Related records

model: Transformer (no pretraining)
benchmark: TAPE Secondary Structure
dataset: CB513
evaluation: Transformer: accuracy on CB513

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