Dataset

CB513

Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evaluation results

Release 2026-09-17-d277315f7d76 · 10 evaluations · 10 metric rows. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
TAPE Bepler: CB513 Model: TAPE BeplerTask: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.73 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure Source checking is not independent reproduction.
Transformer (no pretraining): CB513 Configuration: Transformer (no pretraining)Task: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.70 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure Source checking is not independent reproduction.
Alignment: CB513 Configuration: AlignmentTask: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.80 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Source checking is not independent reproduction.
TAPE Unirep: CB513 Model: TAPE UnirepTask: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Independent external evaluation · Evaluation metadata: needs review
0.73 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure Source checking is not independent reproduction.
ResNet (no pretraining): CB513 Configuration: ResNet (no pretraining)Task: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.70 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure Source checking is not independent reproduction.
LSTM (no pretraining): CB513 Configuration: LSTM (no pretraining)Task: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.71 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure Source checking is not independent reproduction.
TAPE Transformer: CB513 Model: TAPE TransformerTask: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.73 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure Source checking is not independent reproduction.
TAPE One Hot: CB513 Method: TAPE One HotTask: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.69 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure Source checking is not independent reproduction.
TAPE LSTM: CB513 Model: TAPE LSTMTask: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.75 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure Source checking is not independent reproduction.
TAPE ResNet: CB513 Model: TAPE ResNetTask: TAPE Secondary StructureDataset: CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Author-reported evaluation · Evaluation metadata: needs review
0.75 accuracy Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedtape primary benchmark evidence · Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

7 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
attributes.reported_population.count 513 Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.reported_population.count` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.reported_population.unit proteins; metric counts residues Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.reported_population.unit` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.source_locator Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.source_locator` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.split CB513 test set; train/test proteins filtered at 25% sequence identity Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `attributes.split` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
attributes.subset No value recorded Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	missing or unspecified No individual claim review recorded Audit details Field: `attributes.subset` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact
name CB513 Context-only references	tape primary benchmark evidence Original source ↗ Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 Retrieved: 2026-09-16T20:23:48.238777+00:00	not individually reviewed No individual claim review recorded Audit details Field: `name` Source artifact SHA-256: `6ee0c3e6e870635cba8fa67e0a4abc5598c0ab2a10ba127a46b67ac450ae0168` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: needs review

tape primary benchmark evidence · Original source · 1906.08230v1

Download this release

Technical metadata and extraction receipts

Stable ID: paper-dataset-c40c5d875e595c406a

areas: protein-function
split: CB513 test set; train/test proteins filtered at 25% sequence identity
subset: Not reported
reported population: count: 513; unit: proteins; metric counts residues
source locator: Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure
missing metadata: manifest: unextracted; scored count: unreported
entity classification: review date: 2026-09-17; rationale: This record identifies a biological data collection or source-labelled evaluation cohort. Keep its dataset identity; split, assay, taxonomic level, candidate restrictions and comparison context remain attributes rather than automatically becoming new entity kinds.; source ids: evidence-discovery-final-tape; source locator: Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure; ambiguities: None recorded

Related records

dataset: ResNet (no pretraining): CB513
dataset: TAPE LSTM: CB513
dataset: TAPE Bepler: CB513
dataset: Transformer (no pretraining): CB513
dataset: LSTM (no pretraining): CB513
dataset: TAPE One Hot: CB513
dataset: TAPE Transformer: CB513
dataset: TAPE ResNet: CB513
dataset: TAPE Unirep: CB513
dataset: Alignment: CB513

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