ProtT5 on PFMBench DEEPLOC2: DeepLoc2 Multi
PFMBench evaluation of ProtT5 on DeepLoc2 Multi, scored with F1 score.
Methods and reproduction
PFMBench evaluation of ProtT5 on DeepLoc2 Multi, scored with F1 score.
- task
- PFMBench DEEPLOC2: DeepLoc2 Multi
- configuration
- ProtT5
- dataset subset
- DeepLoc2 Multi (PFMBench split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- F1 score
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1.
- Configuration
- ProtT5
- Task
- PFMBench DEEPLOC2: DeepLoc2 Multi
- Dataset subset
- DeepLoc2 Multi (PFMBench split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- pfmbench-task-deeploc2
- metric implementation
- F1 score
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ProtT5 on PFMBench DEEPLOC2: DeepLoc2 Multi Configuration: ProtT5Task: PFMBench DEEPLOC2: DeepLoc2 MultiDataset subset: DeepLoc2 Multi (PFMBench split) Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.72624 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedpfmbench primary benchmark evidence · Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation F1 score Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id pfmbench-task-deeploc2 Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1. Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description PFMBench evaluation of ProtT5 on DeepLoc2 Multi, scored with F1 score. Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark pfmbench-task-deeploc2 Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset pfmbench-dataset-deeploc2-multi Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model pfmbench-method-prott5 Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name ProtT5 on PFMBench DEEPLOC2: DeepLoc2 Multi Context-only references | pfmbench primary benchmark evidence Table 3, row(ProtT5 [ 11 ]), column(DL2 M.) Version: 2506.14796v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- pfmbench primary benchmark evidence · Original source · 2506.14796v1
Technical metadata and extraction receipts
Stable ID: pfmbench-evaluation-prott5-deeploc2
- areas
- proteins-complexes
- tasks
- DeepLoc2 Multi
- origin
- author_reported
- protocol
- Fine-tuned with an adapter under the PFMBench harness; train, validation and test counts are in Table 1.
- comparison
- protocol id: pfmbench-task-deeploc2; metric implementation: F1 score
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 3, row(ProtT5 [ 11 ]), column(DL2 M.)
Related records
- benchmark: PFMBench DEEPLOC2: DeepLoc2 Multi
- model: ProtT5
- dataset: DeepLoc2 Multi (PFMBench split)
- evaluation: ProtT5 · PFMBench DEEPLOC2 · F1 score