dyMEAN on ProteinBench AB-SPECIFICITY-PHR: Specificity PHR
ProteinBench evaluation of dyMEAN on Specificity PHR, scored with PHR.
Evaluation results
Release 2026-09-19-f5c67a009c10 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| dyMEAN on ProteinBench AB-SPECIFICITY-PHR: Specificity PHR Configuration: dyMEANTask: ProteinBench AB-SPECIFICITY-PHR: Specificity PHRDataset subset: RAbD, 55 antibody-antigen complexes (ProteinBench split) Antibody design on the 55 antibody-antigen complexes of the RAbD set. Author-reported evaluation · Evaluation metadata: source checked | ||
| 42.04% phr Unit: percent · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 6, row(dyMEAN), column(Specificity PHR ↓) Source checking is not independent reproduction. |
Methods and reproduction
ProteinBench evaluation of dyMEAN on Specificity PHR, scored with PHR.
- task
- ProteinBench AB-SPECIFICITY-PHR: Specificity PHR
- configuration
- dyMEAN
- dataset subset
- RAbD, 55 antibody-antigen complexes (ProteinBench split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- PHR
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Antibody design on the 55 antibody-antigen complexes of the RAbD set.
- Configuration
- dyMEAN
- Task
- ProteinBench AB-SPECIFICITY-PHR: Specificity PHR
- Dataset subset
- RAbD, 55 antibody-antigen complexes (ProteinBench split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- proteinbench-task-ab-specificity-phr
- metric implementation
- PHR
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation PHR Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id proteinbench-task-ab-specificity-phr Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Antibody design on the 55 antibody-antigen complexes of the RAbD set. Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 6, row(dyMEAN), column(Specificity PHR ↓) Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description ProteinBench evaluation of dyMEAN on Specificity PHR, scored with PHR. Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark proteinbench-task-ab-specificity-phr Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset proteinbench-dataset-rabd-55-antibody-antigen-complexes Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model proteinbench-method-dymean Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name dyMEAN on ProteinBench AB-SPECIFICITY-PHR: Specificity PHR Context-only references | proteinbench primary benchmark evidence Table 6, row(dyMEAN), column(Specificity PHR ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-19-f5c67a009c10 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-evaluation-dymean-ab-specificity-phr
- areas
- proteins-complexes
- tasks
- Specificity PHR
- origin
- author_reported
- protocol
- Antibody design on the 55 antibody-antigen complexes of the RAbD set.
- comparison
- protocol id: proteinbench-task-ab-specificity-phr; metric implementation: PHR
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 6, row(dyMEAN), column(Specificity PHR ↓)
Related records
- benchmark: ProteinBench AB-SPECIFICITY-PHR: Specificity PHR
- model: dyMEAN
- dataset: RAbD, 55 antibody-antigen complexes (ProteinBench split)
- evaluation: dyMEAN · ProteinBench AB-SPECIFICITY-PHR · PHR