Native PDBs on ProteinBench CO-LENGTH-300-QUALITY-SCRMSD: length 300, Quality scRMSD
ProteinBench evaluation of Native PDBs on length 300, Quality scRMSD, scored with scRMSD.
Methods and reproduction
ProteinBench evaluation of Native PDBs on length 300, Quality scRMSD, scored with scRMSD.
- task
- ProteinBench CO-LENGTH-300-QUALITY-SCRMSD: length 300, Quality scRMSD
- configuration
- Native PDBs
- dataset subset
- Co-generated structures and sequences at fixed lengths (ProteinBench split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- scRMSD
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Joint structure and sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs.
- Configuration
- Native PDBs
- Task
- ProteinBench CO-LENGTH-300-QUALITY-SCRMSD: length 300, Quality scRMSD
- Dataset subset
- Co-generated structures and sequences at fixed lengths (ProteinBench split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- proteinbench-task-co-length-300-quality-scrmsd
- metric implementation
- scRMSD
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Native PDBs on ProteinBench CO-LENGTH-300-QUALITY-SCRMSD: length 300, Quality scRMSD Configuration: Native PDBsTask: ProteinBench CO-LENGTH-300-QUALITY-SCRMSD: length 300, Quality scRMSDDataset subset: Co-generated structures and sequences at fixed lengths (ProteinBench split) Joint structure and sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Author-reported evaluation · Evaluation metadata: source checked | ||
| 3.94 ± 4.95 scrmsd Unit: score · Direction: lower | Uncertainty: type: standard deviation; value: 4.95 Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation scRMSD Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id proteinbench-task-co-length-300-quality-scrmsd Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Joint structure and sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs. Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description ProteinBench evaluation of Native PDBs on length 300, Quality scRMSD, scored with scRMSD. Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark proteinbench-task-co-length-300-quality-scrmsd Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset proteinbench-dataset-co-generated-structures-and-sequences-at-fixed-lengths Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model proteinbench-method-native-pdbs Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Native PDBs on ProteinBench CO-LENGTH-300-QUALITY-SCRMSD: length 300, Quality scRMSD Context-only references | proteinbench primary benchmark evidence Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓) Version: 2409.06744v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-evaluation-native-pdbs-co-length-300-quality-scrmsd
- areas
- proteins-complexes
- tasks
- length 300, Quality scRMSD
- origin
- author_reported
- protocol
- Joint structure and sequence generation at a fixed length. Values are the mean and standard deviation over repeated runs.
- comparison
- protocol id: proteinbench-task-co-length-300-quality-scrmsd; metric implementation: scRMSD
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 5, row(Native PDBs), column(length 300, Quality scRMSD ↓)