NPT ProteinNPT on ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE
ProteinGym evaluation of NPT ProteinNPT on Supervised substitutions, contiguous split, MSE, scored with MSE.
Methods and reproduction
ProteinGym evaluation of NPT ProteinNPT on Supervised substitutions, contiguous split, MSE, scored with MSE.
- task
- ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE
- configuration
- NPT ProteinNPT
- dataset subset
- ProteinGym substitution DMS assays (ProteinGym split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- MSE
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits.
- Configuration
- NPT ProteinNPT
- Task
- ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE
- Dataset subset
- ProteinGym substitution DMS assays (ProteinGym split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- proteingym-task-sup-sub-mse-contig
- metric implementation
- MSE
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| NPT ProteinNPT on ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE Configuration: NPT ProteinNPTTask: ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSEDataset subset: ProteinGym substitution DMS assays (ProteinGym split) Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.820 mse Unit: error · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation MSE Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id proteingym-task-sup-sub-mse-contig Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description ProteinGym evaluation of NPT ProteinNPT on Supervised substitutions, contiguous split, MSE, scored with MSE. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark proteingym-task-sup-sub-mse-contig Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset proteingym-dataset-proteingym-substitution-dms-assays Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model proteingym-method-npt-proteinnpt Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name NPT ProteinNPT on ProteinGym SUP-SUB-MSE-CONTIG: Supervised substitutions, contiguous split, MSE Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: proteingym-evaluation-npt-proteinnpt-sup-sub-mse-contig
- areas
- proteins-complexes
- tasks
- Supervised substitutions, contiguous split, MSE
- origin
- author_reported
- protocol
- Supervised fitness prediction under three cross-validation schemes: contiguous, modulo and random splits.
- comparison
- protocol id: proteingym-task-sup-sub-mse-contig; metric implementation: MSE
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 3, row(NPT ProteinNPT), column(Supervised substitutions, contiguous split, MSE)