Strengths supported by sources
- Provides a non-neural homology comparator using evolutionary profile information.soedinglab/hh-suite official source · README.md: introduction
model · method
HH-suite
HH-suite searches for protein homologues by comparing sequence profiles represented as hidden Markov models.
At a glance
Explanatory profile: source reviewed · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Method class | Hidden Markov model profile alignmentsoedinglab/hh-suite official source · README.md: introduction |
| Known versions | Not extracted or verified for this record. |
| Training data | Not extracted or verified for this record. |
| Context limits | Not extracted or verified for this record. |
| Access | Not extracted or verified for this record. |
| Code licence | Not extracted or verified for this record. |
| Weights licence | Not extracted or verified for this record. |
How it works
Schematic of the documented input, computation and output; not an executable configuration.
Read the diagram as text
- Protein query profile
- Reference profile database
- HMM–HMM alignment
- Ranked homologues
A query profile is compared with profiles in a reference database. The resulting alignments and similarity evidence support homology-based analysis.
soedinglab/hh-suite official source · README.md: introductionBenchmarks and results
Release 2026-09-16-d74d282221a9 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Strengths and limitations
Limitations and conditions
- Its input information includes a profile and database; it is not directly comparable to a single-sequence model without accounting for that extra information.soedinglab/hh-suite official source · README.md: introduction
Profile review details
Primary project documentation or paper inspected for the explanatory claims and cited locations. Reviewed coverage concerns this narrative, not complete metadata, independent reproduction or a performance ranking.
Stable record: discovery-model-hh-suiteApplicable tests and references
Applicability is distinct from a completed evaluation.
- CAFA · Proposed association
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: discovered
- soedinglab/hh-suite official source · Original source · 43095e46ada4ec2a8a47d47ef5ad7e38b1429f7b
Technical metadata and extraction receipts
Stable ID: discovery-model-hh-suite
- areas
- protein-function
- access
- official_source_linked
- benchmark applicability
- candidate; not evidence of a reported evaluation
- candidate benchmark ids
- discovery-benchmark-cafa
- entity level
- method
- missing metadata
- checkpoint: unextracted; code licence: unextracted; parameters: unextracted; training cutoff: unextracted; training data: unextracted; version: unextracted; weights licence: unextracted
- reported name
- HH-suite
- version
- Not reported
Related records
- applicable to: CAFA
- model: Profile-HMM sequence search