Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
Nucleotide Transformers V2
Nucleotide Transformers V2 as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label
GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
How it works
Evaluation in this paper
Paper-specific evaluated pipeline; exact checkpoint not inferred from label
GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2Evaluations and results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 3 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Nucleotide Transformers V2: Natural versus GenomeOcean-generated DNA classification Configuration: Nucleotide Transformers V2Protocol: Natural versus GenomeOcean-generated DNA classification (Natural vs artificial microbial genome sequence)Dataset: GenomeOcean natural/artificial sequence test DNABERT 2 and NTv 2 standard fine-tuning; GenomeOcean LoRA. Negatives generated by GenomeOcean itself. CAMI 2 train 18,000/validation 2,000; GTDB test 20,000; balanced natural/artificial 2 kb sequences. Author-reported evaluation · Evaluation metadata: needs review | ||
| 83.14 F1 Unit: % · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedGenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column F1; XML row3 column4 Source checking is not independent reproduction. |
| 82.97% Recall Unit: percent · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedGenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column Recall; XML row3 column3 Source checking is not independent reproduction. |
| 83.31% Precision Unit: percent · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedGenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2 Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-1ed48b3f09b2cf8027Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2 Version: preprint archived 2025-02-05 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction Nucleotide Transformers V2 as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2 Version: preprint archived 2025-02-05 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Original source · preprint archived 2025-02-05
Technical metadata and extraction receipts
Stable ID: paper-model-1ed48b3f09b2cf8027
- areas
- microbes-communities
- tasks
- Natural vs artificial microbial genome sequence
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: part2-genomeocean-2025; source locator: Table 2:, row Nucleotide Transformers V2, column Precision; XML row3 column2; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.