Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
DanQ
DanQ as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUROC; XML row3 column2At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
How it works
Evaluation in this paper
Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUROC; XML row3 column2Evaluations and results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DanQ: TF-cell-type binding on held-out chromosomes8and9 Configuration: DanQProtocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)Dataset: genome-wide TF binding sites Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.9254 AUROC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUROC; XML row3 column2 Source checking is not independent reproduction. |
| 0.3065 AUPR Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUPR; XML row3 column3 Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-3c0e48606006e9a73aEvidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2., row DanQ, column AUROC; XML row3 column2 Version: version of record | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction DanQ as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2., row DanQ, column AUROC; XML row3 column2 Version: version of record | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record
Technical metadata and extraction receipts
Stable ID: paper-model-3c0e48606006e9a73a
- areas
- molecular-interactions
- tasks
- transcription-factor DNA binding-site prediction
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: part2-transbind-2026; source locator: Table 2., row DanQ, column AUROC; XML row3 column2; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.