Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
DeepProSite
DeepProSite as evaluated in the cited study. Paper-specific predictor and its documented input information
Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 3 (Tab3), row 4 DeepProSite, column 2: SJC test split RecallAt a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
How it works
Evaluation in this paper
Paper-specific predictor and its documented input information
Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 3 (Tab3), row 4 DeepProSite, column 2: SJC test split RecallEvaluations and results
Release 2026-09-17-d277315f7d76 · 2 evaluations · 8 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DeepProSite: UniProtSMB test split Configuration: DeepProSiteProtocol: UniProtSMB test split (protein-small molecule binding-site prediction)Dataset: UniProtSMB test split Residue-level small-molecule binding-site classification. 80/10/10 train/validation/test partition of nonredundant sequences. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.490 ± 0.013 Recall Unit: unitless · Direction: higher | Uncertainty: printed: 0.013; value: 0.013; type: not explicitly identified in inspected table or caption Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 4 (Tab4), row 4 DeepProSite, column 2: UniProtSMB test split Recall Source checking is not independent reproduction. |
| 0.756 ± 0.005 Precision Unit: unitless · Direction: higher | Uncertainty: printed: 0.005; value: 0.005; type: not explicitly identified in inspected table or caption Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 4 (Tab4), row 4 DeepProSite, column 3: UniProtSMB test split Precision Source checking is not independent reproduction. |
| 0.598 ± 0.006 MCC Unit: unitless · Direction: higher | Uncertainty: printed: 0.006; value: 0.006; type: not explicitly identified in inspected table or caption Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 4 (Tab4), row 4 DeepProSite, column 4: UniProtSMB test split MCC Source checking is not independent reproduction. |
| 0.965 ± 0.001 AUROC Unit: unitless · Direction: higher | Uncertainty: printed: 0.001; value: 0.001; type: not explicitly identified in inspected table or caption Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 4 (Tab4), row 4 DeepProSite, column 5: UniProtSMB test split AUROC Source checking is not independent reproduction. |
| DeepProSite: SJC test split Configuration: DeepProSiteProtocol: SJC test split (protein-small molecule binding-site prediction)Dataset: SJC test split Residue-level small-molecule binding-site classification. 80/10/10 train/validation/test partition of nonredundant sequences. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.458 ± 0.022 Recall Unit: unitless · Direction: higher | Uncertainty: printed: 0.022; value: 0.022; type: not explicitly identified in inspected table or caption Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 3 (Tab3), row 4 DeepProSite, column 2: SJC test split Recall Source checking is not independent reproduction. |
| 0.926 ± 0.002 AUROC Unit: unitless · Direction: higher | Uncertainty: printed: 0.002; value: 0.002; type: not explicitly identified in inspected table or caption Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 3 (Tab3), row 4 DeepProSite, column 5: SJC test split AUROC Source checking is not independent reproduction. |
| 0.524 ± 0.015 MCC Unit: unitless · Direction: higher | Uncertainty: printed: 0.015; value: 0.015; type: not explicitly identified in inspected table or caption Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 3 (Tab3), row 4 DeepProSite, column 4: SJC test split MCC Source checking is not independent reproduction. |
| 0.644 ± 0.011 Precision Unit: unitless · Direction: higher | Uncertainty: printed: 0.011; value: 0.011; type: not explicitly identified in inspected table or caption Scored: Not reported · Eligible: Not reported | source checkedProtein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Table 3 (Tab3), row 4 DeepProSite, column 3: SJC test split Precision Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-f0cf54fd450ed319efEvidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific predictor and its documented input information Individual claims | Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning Table 3 (Tab3), row 4 DeepProSite, column 2: SJC test split Recall Version: version of record | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Introduction DeepProSite as evaluated in the cited study. Paper-specific predictor and its documented input information Individual claims | Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning Table 3 (Tab3), row 4 DeepProSite, column 2: SJC test split Recall Version: version of record | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- Protein-small molecule binding site prediction based on a pre-trained protein language model with contrastive learning · Original source · version of record
Technical metadata and extraction receipts
Stable ID: paper-model-f0cf54fd450ed319ef
- areas
- proteins-complexes
- tasks
- protein-small molecule binding-site prediction
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific predictor and its documented input information
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: clape-smb-2024; source locator: Table 3 (Tab3), row 4 DeepProSite, column 2: SJC test split Recall; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.