ernierna-ss
Named representation or feature baseline with a task-specific linear probe; the complete evaluated pipeline is distinct from its underlying model.
Overview
Named representation or feature baseline with a task-specific linear probe; the complete evaluated pipeline is distinct from its underlying model.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
8 evaluations · 8 metric rows. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Pipeline: ernierna-ss | Protocol: mRNABench variant probes eCLIP: eCLIP binding site prediction Dataset subset: mRNABench eCLIP (mRNABench split) | 0.358 ± 0.003 auprc fraction · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.003; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceernierna-ss on mRNABench variant probes eCLIP: eCLIP binding site prediction Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 5 (XML T2), data row 8, XML tr 10, column 4 (eCLIP | AUPRC), model ernierna-ss |
| Pipeline: ernierna-ss | Protocol: mRNABench variant probes GO: Gene Ontology term prediction Dataset subset: mRNABench GO (mRNABench split) | 0.324 ± 0.004 auprc fraction · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.004; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceernierna-ss on mRNABench variant probes GO: Gene Ontology term prediction Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 6 (XML T3), data row 8, XML tr 10, column 5 (GO | AUPRC), model ernierna-ss |
| Pipeline: ernierna-ss | Protocol: mRNABench variant probes HL: mRNA half life Dataset subset: mRNABench HL (mRNABench split) | 0.456 ± 0.011 pearson_r correlation · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.011; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceernierna-ss on mRNABench variant probes HL: mRNA half life Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 6 (XML T3), data row 8, XML tr 10, column 2 (HL | Pearson R), model ernierna-ss |
| Pipeline: ernierna-ss | Protocol: mRNABench variant probes MRL-HL-Pair: Paired mean ribosome load and half life Dataset subset: mRNABench MRL-HL-Pair (mRNABench split) | 0.532 ± 0.055 pearson_r correlation · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.055; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceernierna-ss on mRNABench variant probes MRL-HL-Pair: Paired mean ribosome load and half life Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 6 (XML T3), data row 8, XML tr 10, column 3 (MRL-HL-Pair | Pearson R), model ernierna-ss |
| Pipeline: ernierna-ss | Protocol: mRNABench variant probes MRL-MPRA: Mean ribosome load on an MPRA library Dataset subset: mRNABench MRL MPRA (mRNABench split) | 0.506 ± 0.002 pearson_r correlation · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.002; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceernierna-ss on mRNABench variant probes MRL-MPRA: Mean ribosome load on an MPRA library Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 6 (XML T3), data row 8, XML tr 10, column 4 (MRL-MPRA | Pearson R), model ernierna-ss |
| Pipeline: ernierna-ss | Protocol: mRNABench variant probes MRL: Mean ribosome load Dataset subset: mRNABench MRL (mRNABench split) | 0.293 ± 0.014 pearson_r correlation · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.014; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceernierna-ss on mRNABench variant probes MRL: Mean ribosome load Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 5 (XML T2), data row 8, XML tr 10, column 5 (MRL | Pearson R), model ernierna-ss |
| Pipeline: ernierna-ss | Protocol: mRNABench variant probes Prot-Loc: Protein localisation Dataset subset: mRNABench Prot Loc (mRNABench split) | 0.322 ± 0.005 auprc fraction · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.005; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceernierna-ss on mRNABench variant probes Prot-Loc: Protein localisation Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 6 (XML T3), data row 8, XML tr 10, column 6 (Prot-Loc | AUPRC), model ernierna-ss |
| Pipeline: ernierna-ss | Protocol: mRNABench variant probes VEP: Variant effect prediction Dataset subset: mRNABench VEP (mRNABench split) | 0.270 ± 0.034 auprc fraction · higher Uncertainty: type: confidence_interval; confidence level: 0.95; reported half width: 0.034; aggregation: mean over ten random splits (table caption wording) Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · source checkedMethods, coverage and sourceernierna-ss on mRNABench variant probes VEP: Variant effect prediction Frozen transcript representations with task-specific linear probes, or named supervised/naive controls. Homology splits where possible; random splits for MRL-MPRA, MRL-HL-Pair and VEP. Reported mean over ten splits; Appendix C enumerates nine seeds. Table captions say ten random splits, while Methods specify homology splits where possible. This source ambiguity and the nine explicitly listed seeds are retained; exact split manifests remain unextracted. Appendix C uses micro-averaged multilabel metrics. Aggregation: Not reported mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 5 (XML T2), data row 8, XML tr 10, column 6 (VEP | AUPRC), model ernierna-ss |
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Release 2026-09-23-2b89723c6dd9 · Record review: source checked
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- mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08
Technical metadata and extraction receipts
Stable ID: mrnabench-variants-2025-method-ernierna-ss
- areas
- rna-transcriptomics
- source locator
- Tables 5/6, row ernierna-ss; Appendix A (APP1), C (APP3), D (APP4)
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- checkpoint revision: unreported; parameters: unextracted
Related records
- model: ernierna-ss on mRNABench variant probes eCLIP: eCLIP binding site prediction
- model: ernierna-ss on mRNABench variant probes GO: Gene Ontology term prediction
- model: ernierna-ss on mRNABench variant probes HL: mRNA half life
- model: ernierna-ss on mRNABench variant probes MRL: Mean ribosome load
- model: ernierna-ss on mRNABench variant probes MRL-HL-Pair: Paired mean ribosome load and half life
- model: ernierna-ss on mRNABench variant probes MRL-MPRA: Mean ribosome load on an MPRA library
- model: ernierna-ss on mRNABench variant probes Prot-Loc: Protein localisation
- model: ernierna-ss on mRNABench variant probes VEP: Variant effect prediction