BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}
Source-specific evaluation. Input conditions: {"reference_network":"STRING","gene_selection":"TFs+1000"}. No equivalence to other releases, protocols or model families is inferred.
Published comparisons
Each figure keeps its source, protocol, dataset and metric together. Results from different protocols are shown separately, without a pooled ranking.
BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}: Early Precision Ratio
Early Precision Ratio (ratio) · Higher values are better for this metric.
Complete selected source table is retained across source-order panels. These point estimates do not establish statistical significance or a universal ranking.
- PIDC · Configuration · Author-reported evaluation4.12
- GENIE3 · Configuration · Author-reported evaluation3.66
- GRNBOOST2 · Configuration · Author-reported evaluation3.45
- SCODE · Configuration · Author-reported evaluation1.06
- PPCOR · Configuration · Author-reported evaluation1.28
- SINCERITIES · Configuration · Author-reported evaluation0.68
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 15 through Figure 5 source CSV row 20, column 20Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| PIDC · Configuration | 4.12 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 15 |
| GENIE3 · Configuration | 3.66 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 16 |
| GRNBOOST2 · Configuration | 3.45 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 17 |
| SCODE · Configuration | 1.06 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 18 |
| PPCOR · Configuration | 1.28 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 19 |
| SINCERITIES · Configuration | 0.68 ratio | status: unreported | Author-reported evaluation · source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 20 |
Scope and limitations
- Source-specific evaluation. Input conditions: {"reference_network":"STRING","gene_selection":"TFs+1000"}. No equivalence to other releases, protocols or model families is inferred.
- Exact source-defined evaluation scope; reported scores are not rewire reproductions.
- Missing source cells and quarantined conflicts are recorded in acquisition and audit tables. Per-result scoring denominators may be unreported.
Source transcription and grouping reviewed by automated source review on 2026-09-19. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-19-eb6149e5d766 · 6 evaluations · 6 metric rows. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| SINCERITIES · BEELINE 2020 Figure 5 · hESC Configuration: SINCERITIESProtocol: BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}Dataset subset: hESC BEELINE 2020 Figure 5 Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.68 Early Precision Ratio Unit: ratio · Direction: higher Aggregation: unreported | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 20 Source checking is not independent reproduction. |
| PIDC · BEELINE 2020 Figure 5 · hESC Configuration: PIDCProtocol: BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}Dataset subset: hESC BEELINE 2020 Figure 5 Author-reported evaluation · Evaluation metadata: discovered | ||
| 4.12 Early Precision Ratio Unit: ratio · Direction: higher Aggregation: unreported | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 15 Source checking is not independent reproduction. |
| PPCOR · BEELINE 2020 Figure 5 · hESC Configuration: PPCORProtocol: BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}Dataset subset: hESC BEELINE 2020 Figure 5 Author-reported evaluation · Evaluation metadata: discovered | ||
| 1.28 Early Precision Ratio Unit: ratio · Direction: higher Aggregation: unreported | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 19 Source checking is not independent reproduction. |
| GRNBOOST2 · BEELINE 2020 Figure 5 · hESC Configuration: GRNBOOST2Protocol: BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}Dataset subset: hESC BEELINE 2020 Figure 5 Author-reported evaluation · Evaluation metadata: discovered | ||
| 3.45 Early Precision Ratio Unit: ratio · Direction: higher Aggregation: unreported | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 17 Source checking is not independent reproduction. |
| GENIE3 · BEELINE 2020 Figure 5 · hESC Configuration: GENIE3Protocol: BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}Dataset subset: hESC BEELINE 2020 Figure 5 Author-reported evaluation · Evaluation metadata: discovered | ||
| 3.66 Early Precision Ratio Unit: ratio · Direction: higher Aggregation: unreported | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 16 Source checking is not independent reproduction. |
| SCODE · BEELINE 2020 Figure 5 · hESC Configuration: SCODEProtocol: BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}Dataset subset: hESC BEELINE 2020 Figure 5 Author-reported evaluation · Evaluation metadata: discovered | ||
| 1.06 Early Precision Ratio Unit: ratio · Direction: higher Aggregation: unreported | Uncertainty: status: unreported Scored: Not reported · Eligible: Not reported | source checkedBEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 18 Source checking is not independent reproduction. |
Overview
Source-specific evaluation. Input conditions: {"reference_network":"STRING","gene_selection":"TFs+1000"}. No equivalence to other releases, protocols or model families is inferred.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
Run instructions
No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-beeline Individual claims | BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 Figure 5 source CSV row 20, column 15 Version: 10.1038/s41592-019-0690-6 source data published 2020 | source checked ai assisted source review · 2026-09-19 Audit detailsField: Claim: acquired-membership-0dbcda170118a23e4ae8 Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
Sources and history
View linked audit checks and correction history
Release 2026-09-19-eb6149e5d766 · Record review: discovered
1 source records and release history
- BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Original source · 10.1038/s41592-019-0690-6 source data published 2020
Technical metadata and extraction receipts
Stable ID: acquired-protocol-b3a78798ab8a7602a63a
- source locator
- Figure 5 source CSV row 20, column 15
- procedure
- BEELINE 2020 Figure 5
- comparison panels
- id: acquired-figure-04ec32d7f6385482b979; title: BEELINE 2020 Figure 5 · hESC · {"reference_network":"STRING","gene_selection":"TFs+1000"}: Early Precision Ratio; protocol id: acquired-protocol-b3a78798ab8a7602a63a; dataset id: acquired-dataset-65ec1a2e5ff66c7e38c6; metric: Early Precision Ratio; unit: ratio; direction: higher; result ids: acquired-result-205dbe18a0f45de7ae98; acquired-result-85cbecfaf824e49bf44a; acquired-result-7ae6527eab56e78b9d5b; acquired-result-99bc22ea61ee25e7b808; acquired-result-3d4d363c02b8c7ec49fc; acquired-result-09ce4697cc04dfd5ebba; source ids: acquired-source-31344fb7e5e8ae6b9666; source locator: Figure 5 source CSV row 20, column 15 through Figure 5 source CSV row 20, column 20; context: Complete selected source table is retained across source-order panels. These point estimates do not establish statistical significance or a universal ranking.; caveats: Source-specific evaluation. Input conditions: {"reference_network":"STRING","gene_selection":"TFs+1000"}. No equivalence to other releases, protocols or model families is inferred.; Exact source-defined evaluation scope; reported scores are not rewire reproductions.; Missing source cells and quarantined conflicts are recorded in acquisition and audit tables. Per-result scoring denominators may be unreported.; review: method: automated_source_review; date: 2026-09-19
- scope limitations
- Exact source-defined evaluation scope; reported scores are not rewire reproductions.
Related records
- part of: BEELINE
- benchmark: GENIE3 · BEELINE 2020 Figure 5 · hESC
- benchmark: GRNBOOST2 · BEELINE 2020 Figure 5 · hESC
- benchmark: PPCOR · BEELINE 2020 Figure 5 · hESC
- benchmark: SCODE · BEELINE 2020 Figure 5 · hESC
- benchmark: SINCERITIES · BEELINE 2020 Figure 5 · hESC
- benchmark: PIDC · BEELINE 2020 Figure 5 · hESC
- subject: BEELINE 2020 Figure 5: benchmark membership