PGB terminator strength tobacco leaves: A. thaliana: terminator strength prediction
terminator strength prediction. Scored with R² on terminator strength test sequences: tobacco leaves: A. thaliana. 170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here.
Overview
terminator strength prediction. Scored with R² on terminator strength test sequences: tobacco leaves: A. thaliana. 170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
PGB terminator strength tobacco leaves: A. thaliana: terminator strength prediction
r2 (coefficient of determination) · Higher values are better.
Every method PGB terminator strength reports on terminator strength prediction, scored with R² on terminator strength test sequences: tobacco leaves: A. thaliana.
PGB terminator strength tobacco leaves: A. thaliana: terminator strength prediction · terminator strength test sequences: tobacco leaves: A. thaliana (PGB terminator strength split)
Evidence origin: Author-reported evaluation. Numerical source review does not establish independent reproduction.
AgroNT Figure 3f source table · Fig3_panelf.txt, column R2, tobacco leaves: A. thaliana; Methods Sec21Author-reported R² values, source checked but not independently reproduced. No uncertainty is supplied in these tables.
All comparison limitations (3)
- Author-reported R² values, source checked but not independently reproduced. No uncertainty is supplied in these tables.
- Compare only within the same task, assay system and sequence class. No aggregate across these conditions is reported here.
- Exact fitted checkpoint hashes, seeds and scoring denominators have not been established for these source rows.
Automated source review: 2026-09-23.
No unavailable values; missing scores remain labelled and are never plotted as zero.
Showing 2 of 2 matching rows.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
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Baseline coverage
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- Author-reported evaluations
- 2
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Conventional reference
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Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
Coverage is derived from release 2026-09-23-2b89723c6dd9. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
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Strengths, limitations and unresolved questions
Evidence
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Evidence table
Inspect claims, sources and review details
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of agront-2024-plant-genomic-benchmark Individual claims | AgroNT Figure 3f source table Fig3_panelf.txt, column R2, tobacco leaves: A. thaliana; Methods Sec21 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 78ec8156c2ffb3e5475277fdb7eb603294224e53 | source checked automated source review · 2026-09-23 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: agront-2024-fig3f-association-tobacco-leaves-a-thaliana Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Relationship: part of agront-2024-plant-genomic-benchmark Individual claims | AgroNT: published methods and Figure 3 Fig3_panelf.txt, column R2, tobacco leaves: A. thaliana; Methods Sec21 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Version of record, 2024-07-09; retrieved XML snapshot | source checked automated source review · 2026-09-23 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: agront-2024-fig3f-association-tobacco-leaves-a-thaliana Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
2 source records and release history
- AgroNT Figure 3f source table · Original source · 78ec8156c2ffb3e5475277fdb7eb603294224e53
- AgroNT: published methods and Figure 3 · Original source · Version of record, 2024-07-09; retrieved XML snapshot
Technical metadata and extraction receipts
Stable ID: agront-2024-fig3f-task-tobacco-leaves-a-thaliana
- areas
- genomics
- tasks
- terminator strength prediction
- metric
- R²
- metric direction
- higher
- dataset
- terminator strength test sequences: tobacco leaves: A. thaliana
- protocol
- 170 bp assay sequences; original study train/test datasets, as described in Methods Sec21. R² is scored separately by assay system and sequence class. Fitted model checkpoint, seeds and scored counts are not established here.
- source locator
- Fig3_panelf.txt, column R2, tobacco leaves: A. thaliana; Methods Sec21
- comparison panels
- id: agront-2024-fig3f-panel-tobacco-leaves-a-thaliana; title: PGB terminator strength tobacco leaves: A. thaliana: terminator strength prediction; protocol id: agront-2024-fig3f-task-tobacco-leaves-a-thaliana; dataset id: agront-2024-fig3f-dataset-terminator-strength-test-sequences-tobacco-leaves-a-thaliana; metric: r2; unit: coefficient of determination; direction: higher; result ids: agront-2024-fig3f-result-agront-terminator-strength-tobacco-leaves-tobacco-leaves-a-thaliana-r2; agront-2024-fig3f-result-cnn-gorjifard-et-al-terminator-strength-tobacco-leaves-tobacco-leaves-a-thaliana-r2; source ids: agront-2024-fig3f-source; source locator: Fig3_panelf.txt, column R2, tobacco leaves: A. thaliana; Methods Sec21; context: Every method PGB terminator strength reports on terminator strength prediction, scored with R² on terminator strength test sequences: tobacco leaves: A. thaliana.; caveats: Author-reported R² values, source checked but not independently reproduced. No uncertainty is supplied in these tables.; Compare only within the same task, assay system and sequence class. No aggregate across these conditions is reported here.; Exact fitted checkpoint hashes, seeds and scoring denominators have not been established for these source rows.; review: method: automated_source_review; date: 2026-09-23
- entity level
- protocol
Related records
- part of: Plant Genomic Benchmark (PGB)
- subject: PGB terminator strength tobacco leaves: A. thaliana: part of agront-2024-plant-genomic-benchmark
- benchmark: AgroNT: terminator strength, tobacco leaves on PGB terminator strength tobacco leaves: A. thaliana: terminator strength prediction
- benchmark: CNN (Gorjifard et al.): terminator strength, tobacco leaves on PGB terminator strength tobacco leaves: A. thaliana: terminator strength prediction