GEARS Norman2019 CPA-control comparison
Source-specific reported comparison. Protocol details, fitted configurations and limitations are retained separately from other evaluations.
Overview
Source-specific reported comparison. Protocol details, fitted configurations and limitations are retained separately from other evaluations.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
GEARS Norman2019 CPA-control comparison MSE: Norman2019 perturbation-response MSE
mse (squared_expression_units_unreported) · Lower values are better.
Every method GEARS Norman2019 CPA-control comparison reports on Norman2019 perturbation-response MSE, scored with Mean squared error on Norman et al.2019 perturbation data used in GEARS Supplementary Table6.
GEARS Norman2019 CPA-control comparison MSE: Norman2019 perturbation-response MSE · Norman et al.2019 perturbation data used in GEARS Supplementary Table6 (GEARS Norman2019 CPA-control comparison split)
Evidence origin: Author-reported evaluation. Numerical source review does not establish independent reproduction.
GEARS primary supplement, Table6 · Supplementary Table6, printed p34 / PDF p35; metric definitions Table1; Supplementary Note5.Complete four-method table; author-reported results, not reproduced.
All comparison limitations (5)
- Complete four-method table; author-reported results, not reproduced.
- The table prints ± spreads without defining SD, SE or CI in its caption. Preserve the printed values and mark spread type unreported.
- The table labels MSE without explicitly restating the scored gene subset. Top20 is usual in this paper, but is not silently inferred for this table.
- Exact split manifests, assay counts scored, checkpoint revision and evaluator commit are unextracted.
- No Perturb also occurs in Table5 and may be reused evidence; no independent replicate is claimed.
Automated source review: 2026-09-23.
No unavailable values; missing scores remain labelled and are never plotted as zero.
Showing 4 of 4 matching rows.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
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Protocols
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Null control
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Conventional reference
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Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
Coverage is derived from release 2026-09-23-2b89723c6dd9. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
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Run this benchmark
The supplementary table reports this evaluation. Rewire has not run it and has no maintained reproduction recipe. Exact evaluator and split revisions remain unextracted.
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GEARS primary supplement, Table6 · Supplementary Table6, printed p34 / PDF p35; metric definitions Table1; Supplementary Note5.Strengths, limitations and unresolved questions
Evidence
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Evidence table
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Sources and history
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Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- GEARS primary supplement, Table6 · Original source · 10.1038/s41587-023-01905-6 publisher supplement
Technical metadata and extraction receipts
Stable ID: model-coverage-gears-norman-cpa-controls
- areas
- cells-spatial-multiomics
- run documentation
- record id: model-coverage-gears-norman-cpa-controls; status: source_reviewed_not_executed; source ids: coverage-source-gears-supp; source locator: Supplementary Table6, printed p34 / PDF p35; metric definitions Table1; Supplementary Note5.; summary: The supplementary table reports this evaluation. Rewire has not run it and has no maintained reproduction recipe. Exact evaluator and split revisions remain unextracted.
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