0.4102 protein_rmsd
Boltz R · protein_rmsd · Plinder-L95
- Tested configuration
- Boltz R
- Protocol
- Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding
- Dataset subset
- Plinder-L95
- Procedure
- Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries
- Evaluation
- Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95
- Evidence
- Author-reported evaluation · source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column protein_rmsd; footnote a
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: discovered. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-19-eb6149e5d766 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: Boltz RProtocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-foldingDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.4102 protein_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column protein_rmsd; footnote a Source checking is not independent reproduction. |
Methods and reproduction
Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries; Plinder-L95. Source checked, not independently reproduced.
- configuration
- Boltz R
- protocol
- Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-folding
- dataset subset
- Plinder-L95
- Split
- all entries (includes Before and After training cutoff subsets)
- Adaptation
- unreported
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.4102 Individual claims | Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction Table 1 (XML tbl1); row Boltz R; column protein_rmsd; footnote a Version: version of record | source checked independent automated cell check and ai scope review · 2026-09-19 author reported Audit detailsTranscription checked independently. No human review or scientific reproduction claimed. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
View linked audit checks and correction history
Release 2026-09-19-eb6149e5d766 · Record review: source checked
1 source records and release history
- Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Original source · version of record
Technical metadata and extraction receipts
Stable ID: acquired-result-5263d447621b33ce5e5b
- metric
- protein_rmsd
- metric direction
- lower
- unit
- angstrom
- printed value
- 0.4102
- numeric value
- 0.4102
- uncertainty
- Not reported
- aggregation
- median
- scoring conditions
- aggregation: median; checkpoint hash: Not reported; comparison compatibility: mixed_input_information; descriptive source table only, no ranked fair-comparison claim; dataset size: 6600; eligible count: Not reported; input information: Vina receives ground-truth ligand-centred 30 angstrom cubic search box and exhaustiveness 16; neural co-folding methods receive shared MMSeqs2 v15 MSAs; input conditions differ.; model configuration: Boltz recycle=10, diffusion samples=5; AF3 and DiffDock default parameters; restraint variants as table condition.; plinder release: unextracted; restraint parameters: σstart = 1, w chiral = w geom = 1; scored count: Not reported; selection: monomer proteins; single nonpolymeric ligand with sp3-carbon chiral center; allowed elements C,N,O,F,P,S,Cl,Br,I; RDKit conformer generation; ligand Tanimoto clustering 0.95; training overlap: All-entry summary includes structures before 2021-09-30; do not label held-out generalization.
- source locator
- Table 1 (XML tbl1); row Boltz R; column protein_rmsd; footnote a
- acquisition candidate id
- plinder-stereochemistry-t1-21
- missing metadata
- denominator: unreported
- review
- method: independent_automated_cell_check_and_ai_scope_review; date: 2026-09-19; artifact sha256: 78a77b9a0ab8bfa371f5b9baef3f443f4590d6e71cf864d67e90e9ebdfa7fc1b; receipt: data/omics/acquisition/2026-09-19/proteins/; notes: Transcription checked independently. No human review or scientific reproduction claimed.