Plinder-L95
Source-defined subset: Plinder-L95. Exact membership and scoring coverage remain as reported in the cited artifact.
Evaluation results
Release 2026-09-19-eb6149e5d766 · 7 evaluations · 33 metric rows. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Boltz-1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: Boltz-1Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-foldingDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Independent external evaluation · Evaluation metadata: discovered | ||
| 60.58% chirality Unit: percent · Direction: higher Aggregation: percentage of molecules with consistent chirality | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz-1; column chirality; footnote a Source checking is not independent reproduction. |
| 0.0283 bond_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz-1; column bond_rmsd; footnote a Source checking is not independent reproduction. |
| 0.4381 angle_rmsd Unit: degree · Direction: lower Aggregation: unreported in Table 1 footnote | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz-1; column angle_rmsd; footnote a Source checking is not independent reproduction. |
| 0.4041 protein_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz-1; column protein_rmsd; footnote a Source checking is not independent reproduction. |
| Boltz Rc · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: Boltz RcProtocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-foldingDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.2997 angle_rmsd Unit: degree · Direction: lower Aggregation: unreported in Table 1 footnote | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz Rc; column angle_rmsd; footnote a Source checking is not independent reproduction. |
| 0.4068 protein_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz Rc; column protein_rmsd; footnote a Source checking is not independent reproduction. |
| 0.0215 bond_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz Rc; column bond_rmsd; footnote a Source checking is not independent reproduction. |
| Vina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: VinaProtocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search boxDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Independent external evaluation · Evaluation metadata: discovered | ||
| 100% chirality Unit: percent · Direction: higher Aggregation: percentage of molecules with consistent chirality | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column chirality; footnote a Source checking is not independent reproduction. |
| 0 angle_rmsd Unit: degree · Direction: lower Aggregation: unreported in Table 1 footnote | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column angle_rmsd; footnote a Source checking is not independent reproduction. |
| 0 bond_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column bond_rmsd; footnote a Source checking is not independent reproduction. |
| Boltz R1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: Boltz R1Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-foldingDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Author-reported evaluation · Evaluation metadata: discovered | ||
| 99.77% chirality Unit: percent · Direction: higher Aggregation: percentage of molecules with consistent chirality | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R1; column chirality; footnote a Source checking is not independent reproduction. |
| 0.8973 angle_rmsd Unit: degree · Direction: lower Aggregation: unreported in Table 1 footnote | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R1; column angle_rmsd; footnote a Source checking is not independent reproduction. |
| 0.0345 bond_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R1; column bond_rmsd; footnote a Source checking is not independent reproduction. |
| DiffDock · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: DiffDockProtocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · rigid-receptor dockingDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Independent external evaluation · Evaluation metadata: discovered | ||
| 0 angle_rmsd Unit: degree · Direction: lower Aggregation: unreported in Table 1 footnote | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row DiffDock; column angle_rmsd; footnote a Source checking is not independent reproduction. |
| 100% chirality Unit: percent · Direction: higher Aggregation: percentage of molecules with consistent chirality | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row DiffDock; column chirality; footnote a Source checking is not independent reproduction. |
| 0 bond_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row DiffDock; column bond_rmsd; footnote a Source checking is not independent reproduction. |
| AF3 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: AF3Protocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-foldingDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Independent external evaluation · Evaluation metadata: discovered | ||
| 0.1895 angle_rmsd Unit: degree · Direction: lower Aggregation: unreported in Table 1 footnote | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row AF3; column angle_rmsd; footnote a Source checking is not independent reproduction. |
| 0.9981 ligand_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row AF3; column ligand_rmsd; footnote a Source checking is not independent reproduction. |
| 70.77% chirality Unit: percent · Direction: higher Aggregation: percentage of molecules with consistent chirality | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row AF3; column chirality; footnote a Source checking is not independent reproduction. |
| 0.3632 protein_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Source checking is not independent reproduction. |
| Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: Boltz RProtocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · co-foldingDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Author-reported evaluation · Evaluation metadata: discovered | ||
| 100% chirality Unit: percent · Direction: higher Aggregation: percentage of molecules with consistent chirality | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column chirality; footnote a Source checking is not independent reproduction. |
| 0.4102 protein_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column protein_rmsd; footnote a Source checking is not independent reproduction. |
| 0.0448 angle_rmsd Unit: degree · Direction: lower Aggregation: unreported in Table 1 footnote | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column angle_rmsd; footnote a Source checking is not independent reproduction. |
| 0.0003 bond_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column bond_rmsd; footnote a Source checking is not independent reproduction. |
| 1.381 ligand_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Boltz R; column ligand_rmsd; footnote a Source checking is not independent reproduction. |
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
3 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.source_locator Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Context-only references | Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Source-defined subset: Plinder-L95. Exact membership and scoring coverage remain as reported in the cited artifact. Context-only references | Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name Plinder-L95 Context-only references | Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-19-eb6149e5d766 · Record review: discovered
1 source records and release history
- Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Original source · version of record
Technical metadata and extraction receipts
Stable ID: acquired-dataset-500bdf8d9750fb032041
- source locator
- Table 1 (XML tbl1); row AF3; column protein_rmsd; footnote a
- missing metadata
- split manifest: unextracted
Related records
- dataset: Boltz-1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95
- dataset: Boltz Rc · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95
- dataset: AF3 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95
- dataset: DiffDock · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95
- dataset: Vina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95
- dataset: Boltz R1 · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95
- dataset: Boltz R · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95