Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search box
Source-specific evaluation. Input conditions: docking with ground-truth-centred search box. No equivalence to other releases, protocols or model families is inferred.
Tested entities and results
Release 2026-09-19-eb6149e5d766 · 1 evaluation · 4 metric rows. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Vina · Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 Configuration: VinaProtocol: Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries · Plinder-L95 · docking with ground-truth-centred search boxDataset subset: Plinder-L95 Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries Independent external evaluation · Evaluation metadata: discovered | ||
| 100% chirality Unit: percent · Direction: higher Aggregation: percentage of molecules with consistent chirality | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column chirality; footnote a Source checking is not independent reproduction. |
| 0 angle_rmsd Unit: degree · Direction: lower Aggregation: unreported in Table 1 footnote | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column angle_rmsd; footnote a Source checking is not independent reproduction. |
| 0 bond_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column bond_rmsd; footnote a Source checking is not independent reproduction. |
| 2.206 ligand_rmsd Unit: angstrom · Direction: lower Aggregation: median | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedImproving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Table 1 (XML tbl1); row Vina; column ligand_rmsd; footnote a Source checking is not independent reproduction. |
Overview
Source-specific evaluation. Input conditions: docking with ground-truth-centred search box. No equivalence to other releases, protocols or model families is inferred.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
Run instructions
No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-plinder Individual claims | Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction Table 1 (XML tbl1); row Vina; column ligand_rmsd; footnote a Version: version of record | source checked ai assisted source review · 2026-09-19 Audit detailsField: Claim: acquired-membership-d016495cd0ef76c37b5a Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-19-eb6149e5d766 · Record review: discovered
1 source records and release history
- Improving Stereochemical Limitations in Protein–Ligand Complex Structure Prediction · Original source · version of record
Technical metadata and extraction receipts
Stable ID: acquired-protocol-d4acaf69f73675e7a672
- source locator
- Table 1 (XML tbl1); row Vina; column ligand_rmsd; footnote a
- procedure
- Paper-specific Plinder-L95 stereochemistry assessment; Table 1 all entries
- comparison panels
- None recorded
- scope limitations
- Exact source-defined evaluation scope; reported scores are not rewire reproductions.