0.595 spearman_r
Nucleotide Transformer (probed) · DART-Eval CA-SPEARMAN-H1ESC · Spearman r
- Tested configuration
- Nucleotide Transformer (probed)
- Task
- DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- Dataset subset
- ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
- Procedure
- Rank correlation with measured accessibility among positive H1ESC peaks.
- Evaluation
- Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- Evidence
- Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed NT), column(CA-SPEARMAN-H1ESC)
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Methods and reproduction
DART-Eval evaluation of Nucleotide Transformer (probed) on Chromatin activity prediction, H1ESC, positives only, scored with Spearman r.
- task
- DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only
- configuration
- Nucleotide Transformer (probed)
- dataset subset
- ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Spearman r
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Nucleotide Transformer (probed) on DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives only Configuration: Nucleotide Transformer (probed)Task: DART-Eval CA-SPEARMAN-H1ESC: Chromatin activity prediction, H1ESC, positives onlyDataset subset: ENCODE chromatin accessibility peaks in five cell lines (DART-Eval split) Rank correlation with measured accessibility among positive H1ESC peaks. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.595 spearman_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 5, row(Probed NT), column(CA-SPEARMAN-H1ESC) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.595 Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 5, row(Probed NT), column(CA-SPEARMAN-H1ESC) Version: 2412.05430v1 | source checked Deterministic parse of the pinned HTML tables, with row and column counts asserted · 2026-09-18 author reported Audit detailsSource checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. Extraction artifact SHA-256: |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-result-nucleotide-transformer-probed-ca-spearman-h1esc-spearman-r
- areas
- dna-genomes
- tasks
- Chromatin activity prediction, H1ESC, positives only
- metric
- spearman_r
- metric direction
- higher
- unit
- fraction
- printed value
- 0.595
- numeric value
- 0.595
- uncertainty
- Not reported
- source locator
- Table 5, row(Probed NT), column(CA-SPEARMAN-H1ESC)
- missing metadata
- denominator: unextracted; seeds: unreported
- review
- method: Deterministic parse of the pinned HTML tables, with row and column counts asserted; reviewer: Codex research agent; no human review claimed; date: 2026-09-18; artifact sha256: 4194b137ba55c9a2c269d119a9afec6ae1bb0feaf17d91433ae483c41221a56b; retrieval url: https://arxiv.org/html/2412.05430v1; notes: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.