Result

0.556 ± 0.030 pearson_delta_expression

GEARS · GEARS Norman2019 CPA-control comparison Pearson DE · Pearson correlation of differential expression

Tested configuration: GEARS
Protocol: GEARS Norman2019 CPA-control comparison Pearson DE: Norman2019 perturbation-response Pearson DE
Dataset subset: Norman et al.2019 perturbation data used in GEARS Supplementary Table6 (GEARS Norman2019 CPA-control comparison split)
Related family profiles: GEARS; GEARS
Procedure: Predict post-perturbation expression on Norman2019. MSE compares predicted and true expression; Pearson DE compares predicted versus true change over unperturbed controls (Supplementary Table1). Exact Table6 scoring gene subset and split manifest remain unextracted.
Evaluation: GEARS on GEARS Norman2019 CPA-control comparison Pearson DE: Norman2019 perturbation-response Pearson DE
Coverage: scored: unreported; eligible: unreported
Uncertainty: type: unreported; reported spread: 0.030; note: Printed ± spread; SD/SE/CI type not established by inspected table caption.
Evidence: Author-reported evaluation · source checkedGEARS primary supplement, Table6 · Supplementary Table6, printed p34 / PDF p35, row GEARS, column Pearson DE

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.

Reproduction

Split: Not reported
Adaptation: Not reported
Scoring implementation: Pearson correlation of differential expression

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: GEARS Norman2019 CPA-control comparison Pearson DE: Norman2019 perturbation-response Pearson DE

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-23-2b89723c6dd9
Property and statement	Original source and location	Review and provenance
Reported result 0.556 ± 0.030 Individual claims	GEARS primary supplement, Table6 Original source ↗ Supplementary Table6, printed p34 / PDF p35, row GEARS, column Pearson DE Version: 10.1038/s41587-023-01905-6 publisher supplement Retrieved: 2026-09-23T11:36:52.243763+00:00	source checked Exact printed values transcribed from the complete primary supplement table; independently checked against the rendered PDF page and pdftotext output. Not model execution. · 2026-09-23 author reported Audit details Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied. Field: `attributes.printed_value` Source artifact SHA-256: `1daaeb10f072577a3e420a796cd7e29e88ea9462639de7332ae91b2fe86b3b24` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `1daaeb10f072577a3e420a796cd7e29e88ea9462639de7332ae91b2fe86b3b24` Extraction artifact

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Sources and history

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Release 2026-09-23-2b89723c6dd9 · Record review: source checked

1 source records and release history

GEARS primary supplement, Table6 · Original source · 10.1038/s41587-023-01905-6 publisher supplement

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Technical metadata and extraction receipts

Stable ID: gears-2023-supp-table6-result-gears-pearson-de-pearson-delta-expression

areas: cells-spatial-multiomics
tasks: Norman2019 perturbation-response Pearson DE
metric: pearson_delta_expression
metric direction: higher
unit: correlation
printed value: 0.556 ± 0.030
numeric value: 0.556
uncertainty: type: unreported; reported spread: 0.030; note: Printed ± spread; SD/SE/CI type not established by inspected table caption.
source locator: Supplementary Table6, printed p34 / PDF p35, row GEARS, column Pearson DE
missing metadata: denominator: unextracted; seeds: unreported
review: method: Exact printed values transcribed from the complete primary supplement table; independently checked against the rendered PDF page and pdftotext output. Not model execution.; reviewer: Codex automated primary-source review; date: 2026-09-23; artifact sha256: 1daaeb10f072577a3e420a796cd7e29e88ea9462639de7332ae91b2fe86b3b24; retrieval url: https://static-content.springer.com/esm/art%3A10.1038%2Fs41587-023-01905-6/MediaObjects/41587_2023_1905_MOESM1_ESM.pdf; notes: Source checked, not reproduced. Metrics differ by task, so no composite score across tasks is computed or implied.
evidence overlap: One source-table comparison with two metrics per evaluated configuration. No Perturb matches Table5; these are not additional independent runs.

Related records

evaluation: GEARS on GEARS Norman2019 CPA-control comparison Pearson DE: Norman2019 perturbation-response Pearson DE

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