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result · source checked

0.826 AUROC

Caduceus-Ph · AUROC · DNALongBench ETGP

Tested model
Caduceus-Ph
Task or benchmark
Enhancer-target gene prediction
Dataset
DNALongBench ETGP
Procedure
Long-range ETGP benchmark; source table reports AUROC.
Evaluation
Caduceus-Ph: Enhancer-target gene prediction
Evidence
Independent external evaluation · source checkedDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, Caduceus-Ph row, ETGP column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
Caduceus-Ph: Enhancer-target gene prediction
Model: Caduceus-Ph · Benchmark: Enhancer-target gene prediction · Dataset: DNALongBench ETGP

Long-range ETGP benchmark; source table reports AUROC.

Independent external evaluation · Evaluation metadata: needs review

0.826 AUROC

Unit: unitless · Direction: unknown

Uncertainty: not reported in legacy extract

Scored: Not reported · Eligible: Not reported

source checkedDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, Caduceus-Ph row, ETGP column

Source checking is not independent reproduction.

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: source checked

Download this release
Technical metadata and extraction receipts

Stable ID: lit-008

areas
dna-genomes
tasks
Enhancer-target gene prediction
printed value
0.826
numeric value
0.826
metric
AUROC
metric direction
unknown
unit
unitless
uncertainty
Not reported
source locator
Table 3, Caduceus-Ph row, ETGP column
review
method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.493765+00:00; notes: ETGP is the first numeric column, separate from the six CMP cell-type columns and average; caption defines ETGP AUROC. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "T3", "row_cells": ["Caduceus-Ph", "0.826", "0.153", "0.130", "0.101", "0.138", "0.145", "0.133"], "selected_cell_zero_based": 1, "selected_cell_xml": "<td align=\"center\" valign=\"middle\" rowspan=\"1\" colspan=\"1\">0.826</td>", "caption": "AUROC for enhancer-target gene prediction (ETGP) task and SCC scores for the contact map prediction (CMP) task. K562, HFF, H1hESC, GM12878, IMR90, and HCT116 represent different human cell types. The highest scores are highlighted in bold. “Avg” means the average score across different cell types. Notably, the Expert Model achieves the best performance on both ETGP and CMP tasks."}; artifact sha256: fa440a17cecf16a5d872d50a30910f7591b5f6f78e10a944c6bda5ea8d7e32dd; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11741265/fullTextXML
legacy id
lit-008
legacy row
id: lit-008; paper id: dnalongbench-2025; domain id: dna-genomes; task: Enhancer-target gene prediction; model: Caduceus-Ph; model version: Not reported; dataset: DNALongBench ETGP; dataset version: Not reported; split: Not reported; metric: AUROC; value: 0.826; unit: unitless; uncertainty: Not reported; protocol: Long-range ETGP benchmark; source table reports AUROC.; source locator: Table 3, Caduceus-Ph row, ETGP column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11741265/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
missing metadata
model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
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