This paper-specific evaluation tests Enhancer-target gene prediction using DNALongBench ETGP.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, HyenaDNA row, ETGP column; Table 3, Caduceus-Ph row, ETGP column |
| Inputs | DNALongBench ETGPDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, HyenaDNA row, ETGP column; Table 3, Caduceus-Ph row, ETGP column |
| Assessment | AUROCDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, HyenaDNA row, ETGP column; Table 3, Caduceus-Ph row, ETGP column |
| Recorded split or evaluation setting | UnextractedDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, HyenaDNA row, ETGP column; Table 3, Caduceus-Ph row, ETGP column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Long-range ETGP benchmark; source table reports AUROC. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
DNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, HyenaDNA row, ETGP column; Table 3, Caduceus-Ph row, ETGP columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| HyenaDNA: Enhancer-target gene prediction Long-range ETGP benchmark; source table reports AUROC. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.828 AUROC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, HyenaDNA row, ETGP column Source checking is not independent reproduction. |
| Caduceus-Ph: Enhancer-target gene prediction Long-range ETGP benchmark; source table reports AUROC. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.826 AUROC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedDNALongBench: A Benchmark Suite for Long-Range DNA Prediction Tasks · Table 3, Caduceus-Ph row, ETGP column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-2cbac97dd849f5Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-2cbac97dd849f5