result · source checked
0.814 F1
BPfold · F1 · PDB RNA set
- Tested model
- BPfold
- Task or benchmark
- RNA secondary structure
- Dataset
- PDB RNA set
- Procedure
- Family-wise evaluation of canonical base-pair predictions.
- Evaluation
- BPfold: RNA secondary structure
- Evidence
- Author-reported evaluation · source checkedDeep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2, BPfold row, PDB F1 column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| BPfold: RNA secondary structure Family-wise evaluation of canonical base-pair predictions. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.814 F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedDeep generalizable prediction of RNA secondary structure via base pair motif energy · Table 2, BPfold row, PDB F1 column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Deep generalizable prediction of RNA secondary structure via base pair motif energy · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-011
- areas
- rna-transcriptomes
- tasks
- RNA secondary structure
- printed value
- 0.814
- numeric value
- 0.814
- metric
- F1
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- Table 2, BPfold row, PDB F1 column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.502000+00:00; notes: PDB is the second four-metric block; its F1 is numeric column six, not Rfam F1. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "Tab2", "row_cells": ["BPfold", "0.694", "0.689", "0.660", "0.741", "0.817", "0.814", "0.840", "0.801"], "selected_cell_zero_based": 6, "selected_cell_xml": "<td colspan=\"1\" rowspan=\"1\">0.814</td>", "caption": "Family-wise evaluation of three DL methods (BPfold, SPOT-RNA, and MXfold2), three shallow learning methods (ContextFold, CONTRAfold, and EternaFold) and non-learning methods (LinearFold, RNAfold, SimFold, and RNAstructure) on Rfam12.3–14.10 (n = 10,791 RNAs) and PDB (n = 116 RNAs) datasets"}; artifact sha256: 976218bd172998a1a6e7ed1609ecb8cb2ee380fb48a8dc7b25bc05ea8b0a49af; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12216785/fullTextXML
- legacy id
- lit-011
- legacy row
- id: lit-011; paper id: bpfold-2025; domain id: rna-transcriptomes; task: RNA secondary structure; model: BPfold; model version: Not reported; dataset: PDB RNA set; dataset version: 116 RNAs; split: Not reported; metric: F1; value: 0.814; unit: unitless; uncertainty: Not reported; protocol: Family-wise evaluation of canonical base-pair predictions.; source locator: Table 2, BPfold row, PDB F1 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12216785/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:25:00Z
- missing metadata
- model version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: BPfold: RNA secondary structure
- subject: Reported F1 for BPfold