result · source checked
0.753 F1 score
MetaPhlAn3 · F1 score · CAMI II Toy human gastrooral sample19-new
- Tested model
- MetaPhlAn3
- Task or benchmark
- Metagenomic taxonomic classification
- Dataset
- CAMI II Toy human gastrooral sample19-new
- Procedure
- Newly generated sample19 used for classifier comparison.
- Evaluation
- MetaPhlAn3: Metagenomic taxonomic classification
- Evidence
- Independent external evaluation · source checkedAdvancing metagenomic classification with NABAS+: a novel alignment-based approach · Table 3, Sample19-new / MetaPhlAn3 row, F1 score column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| MetaPhlAn3: Metagenomic taxonomic classification Model: MetaPhlAn3 · Benchmark: Metagenomic taxonomic classification · Dataset: CAMI II Toy human gastrooral sample19-new Newly generated sample19 used for classifier comparison. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.753 F1 score Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedAdvancing metagenomic classification with NABAS+: a novel alignment-based approach · Table 3, Sample19-new / MetaPhlAn3 row, F1 score column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Advancing metagenomic classification with NABAS+: a novel alignment-based approach · Original source · PMC12231603.1
Technical metadata and extraction receipts
Stable ID: lit-040
- areas
- microbes-communities
- tasks
- Metagenomic taxonomic classification
- printed value
- 0.753
- numeric value
- 0.753
- metric
- F1 score
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- Table 3, Sample19-new / MetaPhlAn3 row, F1 score column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.547023+00:00; notes: Selected Sample19-new explicitly, not Sample19-old, and F1 rather than precision/recall. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "tbl3", "row_cells": ["Sample19-new", "MetaPhlAn3", "0.778", "0.729", "0.753"], "selected_cell_zero_based": 4, "selected_cell_xml": "<td rowspan=\"1\" colspan=\"1\">0.753</td>", "caption": "Performance of the classifier on the original and newly generated sample19"}; artifact sha256: 49903e751beb86f6744825d2fdb3ea2fbe327b52b1ce68c323bfa8b66dae71ec; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12231603/fullTextXML
- legacy id
- lit-040
- legacy row
- id: lit-040; paper id: nabas-plus-2025; domain id: microbes-communities; task: Metagenomic taxonomic classification; model: MetaPhlAn3; model version: Not reported; dataset: CAMI II Toy human gastrooral sample19-new; dataset version: Not reported; split: Not reported; metric: F1 score; value: 0.753; unit: unitless; uncertainty: Not reported; protocol: Newly generated sample19 used for classifier comparison.; source locator: Table 3, Sample19-new / MetaPhlAn3 row, F1 score column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12231603/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: MetaPhlAn3: Metagenomic taxonomic classification
- subject: Reported F1 score for MetaPhlAn3