result · source checked
42.1 Forward-screening success rate
Vina · Forward-screening success rate · CASF-2016 blind docked poses
- Tested model
- Vina
- Task or benchmark
- Protein–ligand virtual screening
- Dataset
- CASF-2016 blind docked poses
- Procedure
- Vina scoring on the same DiffDock-NMDN blind docked poses; not ligand-pose RMSD.
- Evaluation
- Vina: Protein–ligand virtual screening
- Evidence
- Independent external evaluation · source checkedNormalized Protein–Ligand Distance Likelihood Score for End-to-End Blind Docking and Virtual Screening · Table 2, Vina scoring row, success rate (%) column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Vina: Protein–ligand virtual screening Vina scoring on the same DiffDock-NMDN blind docked poses; not ligand-pose RMSD. Independent external evaluation · Evaluation metadata: needs review | ||
| 42.1 Forward-screening success rate Unit: % · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedNormalized Protein–Ligand Distance Likelihood Score for End-to-End Blind Docking and Virtual Screening · Table 2, Vina scoring row, success rate (%) column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Normalized Protein–Ligand Distance Likelihood Score for End-to-End Blind Docking and Virtual Screening · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-044
- areas
- molecular-interactions
- tasks
- Protein–ligand virtual screening
- printed value
- 42.1
- numeric value
- 42.1
- metric
- Forward-screening success rate
- metric direction
- unknown
- unit
- %
- uncertainty
- Not reported
- source locator
- Table 2, Vina scoring row, success rate (%) column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:41:16.554518+00:00; notes: All scoring functions share DiffDock-NMDN poses via rowspan. Selected forward-screening success percentage, not docking pose success or scoring-power correlation. This verifies the central score at its source location, not every metadata field or an experimental reproduction.; evidence: {"table_xml_id": "tbl2", "row_cells": ["Vina38", "15.18", "42.1", "0.340", "0.323"], "selected_cell_zero_based": 2, "selected_cell_xml": "<td style=\"border:none;\" align=\"center\" colspan=\"1\" rowspan=\"1\">42.1</td>", "caption": "Performance of Representative Scoring Functions on the CASF-2016 Using the DiffDock-NMDN Blind Docked Posesa"}; artifact sha256: 194b21478aaedd9a7384cabb8b0040ca5b6a4938f4d275627b86a6b787affc20; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11815853/fullTextXML
- legacy id
- lit-044
- legacy row
- id: lit-044; paper id: nmdn-2025; domain id: molecular-interactions; task: Protein–ligand virtual screening; model: Vina; model version: Not reported; dataset: CASF-2016 blind docked poses; dataset version: Not reported; split: Not reported; metric: Forward-screening success rate; value: 42.1; unit: %; uncertainty: Not reported; protocol: Vina scoring on the same DiffDock-NMDN blind docked poses; not ligand-pose RMSD.; source locator: Table 2, Vina scoring row, success rate (%) column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11815853/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract