result · source checked
0.939 Cell-type accuracy
scVI + scANVI · Cell-type accuracy · PBMCs-BS
- Tested model
- scVI + scANVI
- Task or benchmark
- PBMC cell-type classification
- Dataset
- PBMCs-BS
- Procedure
- All features and samples from PBMCs-BS; comparison pipeline combines scVI and scANVI.
- Evaluation
- scVI + scANVI: PBMC cell-type classification
- Evidence
- Independent external evaluation · source checkedscaLR: a low-resource deep neural network-based platform for single cell analysis and biomarker discovery · Table 2, Svi-tools (scVI & scANVI) row, Cell type Accuracy column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| scVI + scANVI: PBMC cell-type classification All features and samples from PBMCs-BS; comparison pipeline combines scVI and scANVI. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.939 Cell-type accuracy Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedscaLR: a low-resource deep neural network-based platform for single cell analysis and biomarker discovery · Table 2, Svi-tools (scVI & scANVI) row, Cell type Accuracy column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- scaLR: a low-resource deep neural network-based platform for single cell analysis and biomarker discovery · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-b3-016
- areas
- cells-tissues
- tasks
- PBMC cell-type classification
- printed value
- 0.939
- numeric value
- 0.939
- metric
- Cell-type accuracy
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- Table 2, Svi-tools (scVI & scANVI) row, Cell type Accuracy column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.405089+00:00; notes: PBMCs-BS all-feature/all-sample cell-type accuracy block, not cell-state accuracy or time. Footnote letters on model labels excluded from identity. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "TB2", "row_cells": ["Svi-tools(scVI & scANVI)b", "0.939", "53:52", "23.914", "0.870", "54:24", "23.645"], "selected_cell_zero_based": 1, "selected_cell_xml": "<td align=\"left\" rowspan=\"1\" colspan=\"1\">0.939</td>", "caption": "Accuracy, wall-clock time, and memory usage of different pipelines executed using all features and samples from the PBMCs-BS dataset."}; artifact sha256: 829afab6a4e30997c608745d3eb280105b8c5c4e601020ffdc55c866144527ca; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12121358/fullTextXML
- legacy id
- lit-b3-016
- legacy row
- id: lit-b3-016; paper id: scalr-2025; domain id: cells-tissues; task: PBMC cell-type classification; model: scVI + scANVI; model version: Not reported; dataset: PBMCs-BS; dataset version: Not reported; split: Not reported; metric: Cell-type accuracy; value: 0.939; unit: unitless; uncertainty: Not reported; protocol: All features and samples from PBMCs-BS; comparison pipeline combines scVI and scANVI.; source locator: Table 2, Svi-tools (scVI & scANVI) row, Cell type Accuracy column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12121358/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:29:32Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract