21.32 Docked frames best-matched RMSD <3 Å
DiffDock holo · Docked frames best-matched RMSD <3 Å · α-synuclein Ligand 47 MD ensemble
- Tested model
- DiffDock holo
- Task or benchmark
- Intrinsically disordered protein ensemble docking
- Dataset
- α-synuclein Ligand 47 MD ensemble
- Procedure
- Fraction of docked frames within 3 Å of MD-observed bound pose; holo protein ensemble.
- Evaluation
- DiffDock holo: Intrinsically disordered protein ensemble docking
- Evidence
- Independent external evaluation · source checkedEnsemble docking for intrinsically disordered proteins · Table 2, Ligand 47 row, DiffDock Holo Docking column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DiffDock holo: Intrinsically disordered protein ensemble docking Model: DiffDock holo · Benchmark: Intrinsically disordered protein ensemble docking · Dataset: α-synuclein Ligand 47 MD ensemble Fraction of docked frames within 3 Å of MD-observed bound pose; holo protein ensemble. Independent external evaluation · Evaluation metadata: needs review | ||
| 21.32 Docked frames best-matched RMSD <3 Å Unit: % · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedEnsemble docking for intrinsically disordered proteins · Table 2, Ligand 47 row, DiffDock Holo Docking column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Ensemble docking for intrinsically disordered proteins · Original source · preprint archived 2025-01-26
Technical metadata and extraction receipts
Stable ID: lit-b3-047
- areas
- molecular-interactions
- tasks
- Intrinsically disordered protein ensemble docking
- printed value
- 21.32
- numeric value
- 21.32
- metric
- Docked frames best-matched RMSD <3 Å
- metric direction
- unknown
- unit
- %
- uncertainty
- Not reported
- source locator
- Table 2, Ligand 47 row, DiffDock Holo Docking column
- review
- method: primary_xml_exact_label_cell_check; reviewer: rewire deterministic table checker v1; reviewed at: 2026-09-16T10:33:56.275Z; notes: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.; evidence: Table 2, Ligand 47 row, DiffDock Holo Docking column; cell: 21.32 (97.21); artifact sha256: d02d91cdde41cb76ec5c86b532dffc564879c69e764a8c6b7752460fbbfd24b7; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11785235/fullTextXML
- legacy id
- lit-b3-047
- legacy row
- id: lit-b3-047; paper id: ensemble-idp-docking-2025; domain id: molecular-interactions; task: Intrinsically disordered protein ensemble docking; model: DiffDock holo; model version: Not reported; dataset: α-synuclein Ligand 47 MD ensemble; dataset version: Not reported; split: Not reported; metric: Docked frames best-matched RMSD <3 Å; value: 21.32; unit: %; uncertainty: Not reported; protocol: Fraction of docked frames within 3 Å of MD-observed bound pose; holo protein ensemble.; source locator: Table 2, Ligand 47 row, DiffDock Holo Docking column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11785235/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:29:32Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract