Result

0.594 Recall

VirSorter2: Recall on Genome-wide prophage detection

Tested configuration: VirSorter2
Protocol: Genome-wide prophage detection (Genome-wide prophage detection)
Dataset: LAMBDA genome-wide prophage test
Procedure: Scan complete genomes with overlapping windows and postprocess predictions into prophage regions. Genome-wide metrics are computed at region level and macro-averaged across genomes. Filtered gLM pipelines include normalization, smoothing, clustering and size filtering; these are not standalone encoder scores. 80 bacterial genomes,47 species,four phyla;386 annotated prophage locations.
Evaluation: VirSorter2: Genome-wide prophage detection
Evidence: Author-reported evaluation · source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5., row VirSorter2, column Recall; XML row19 column3

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Evaluation results

Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
VirSorter2: Genome-wide prophage detection Configuration: VirSorter2Protocol: Genome-wide prophage detection (Genome-wide prophage detection)Dataset: LAMBDA genome-wide prophage test Scan complete genomes with overlapping windows and postprocess predictions into prophage regions. Genome-wide metrics are computed at region level and macro-averaged across genomes. Filtered gLM pipelines include normalization, smoothing, clustering and size filtering; these are not standalone encoder scores. 80 bacterial genomes,47 species,four phyla;386 annotated prophage locations. Author-reported evaluation · Evaluation metadata: needs review
0.594 Recall Unit: fraction · Direction: higher	Uncertainty: unreported Scored: Not reported · Eligible: Not reported	source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5., row VirSorter2, column Recall; XML row19 column3 Source checking is not independent reproduction.

Evidence table

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-d277315f7d76
Property and statement	Original source and location	Review and provenance
Reported result 0.594 Individual claims	LAMBDA: A Prophage Detection Benchmark for Genomic Language Models Original source ↗ Table 5., row VirSorter2, column Recall; XML row19 column3 Version: PMC13041943.1 Retrieved: 2026-09-17T07:56:21.006973+00:00	source checked Primary-table transcription and separate automated source review · 2026-09-17 author reported Audit details Source checked does not mean experimentally reproduced. Field: `attributes.printed_value` Source artifact SHA-256: `22c2e218e87dce757907f6086a0e2ad37c13f785b34fff5bea7cfa1a6c276b16` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-d277315f7d76 · Record review: source checked

LAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Original source · PMC13041943.1

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Technical metadata and extraction receipts

Stable ID: paper-result-b507c4759c12caf2ff

areas: microbes-communities
tasks: Genome-wide prophage detection
printed value: 0.594
numeric value: 0.594
metric: Recall
metric direction: higher
unit: fraction
uncertainty: Not reported
eligible count: Not reported
scored count: Not reported
reported population: Not reported
source locator: Table 5., row VirSorter2, column Recall; XML row19 column3
source occurrences: source id: part2-lambda-prophage-2026; locator: Table 5., row VirSorter2, column Recall; XML row19 column3
review: method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
missing metadata: scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported

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evaluation: VirSorter2: Genome-wide prophage detection

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