RNA tertiary-structure evaluation compares predicted three-dimensional RNA geometry with reference structures.
Explanatory profile: source reviewed · Automated source review, 2026-09-16. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
| Property | Description and evidence |
|---|---|
| Entity type | Task guide; concrete protocol identities remain separate.Sources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
| Datasets | No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. · Not applicableSources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
| Organisms | No shared organism population is defined at this guide level. Record it for each selected dataset. · Not applicableSources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
| Assays | No single measurement assay is fixed by this guide; the endpoint and assay belong to the selected protocol. · Not applicableSources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
| Splits | No executable split is attached to this task identity. Use the selected protocol’s split manifest. · Not applicableSources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
| Allowed inputs | RNA sequence and permitted auxiliary information, plus a reference structure for geometric evaluation.Sources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
| Adaptation | No common fitting regime is imposed here. Keep pretrained, frozen, probed, fine-tuned and conventional methods distinct where applicable. · Not applicableSources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
| Metrics | Protocol-defined structural accuracy. Atom selection, reference states and treatment of missing residues must accompany a number.Sources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
| Baselines | Use complete RNA-structure predictors and their stated input information; a language-model family name alone does not identify a structural pipeline.Sources (2)ml4bio/RNA-FM official source; AlphaFold 3 paper · RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets |
Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol.
Declare the target molecules and available inputs, including whether an alignment is allowed. Compare coordinates against the relevant reference state using an explicit alignment and atom-selection rule. The AlphaFold 3 paper describes a CASP15 RNA comparison; the RNA-FM project documents RhoFold as a separate complete predictor. A base RNA embedding model is not itself that evaluated pipeline.
This is a task guide, not a single versioned benchmark protocol. The connected resources provide examples or concrete procedures. A candidate method or proposed control is not evidence that an evaluation has been completed.
Release 2026-09-17-d277315f7d76 · 0 evaluations · 0 metric rows. Different protocols are not a single leaderboard.
No evaluations linked in this release.
Last literature check: 2026-09-17. Dated primary-source discovery and protocol/table screening. Source checking does not mean experimental reproduction. Only separately extracted and independently reviewed numeric batches are publishable.
| Paper or primary resource | Version | Reference |
|---|---|---|
| Accurate structure prediction of biomolecular interactions with AlphaFold 3 | Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | Read source |
primary protocol reviewed
Reviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol.
Stable record: catalog-task-rna-tertiary-structureTrace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
34 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims | AlphaFold 3 paper RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature 2024; DOI 10.1038/s41586-024-07487-w; XML retrieved 2026-09-16 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: primary_artifact_review |
| Diagram caption Conceptual task guide. Dataset preparation, parameters and scoring must come from a separately identified protocol. Individual claims | ml4bio/RNA-FM official source RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 348951516e0963d22bbb33b3c9fc18c89081d38e | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram steps ["Select targets and reference states","Declare inputs and full prediction pipeline","Predict RNA coordinates","Align and score the specified atoms"] Individual claims | AlphaFold 3 paper RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature 2024; DOI 10.1038/s41586-024-07487-w; XML retrieved 2026-09-16 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: primary_artifact_review |
| Diagram steps ["Select targets and reference states","Declare inputs and full prediction pipeline","Predict RNA coordinates","Align and score the specified atoms"] Individual claims | ml4bio/RNA-FM official source RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 348951516e0963d22bbb33b3c9fc18c89081d38e | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Diagram title Conceptual evaluation workflow Individual claims | AlphaFold 3 paper RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature 2024; DOI 10.1038/s41586-024-07487-w; XML retrieved 2026-09-16 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: primary_artifact_review |
| Diagram title Conceptual evaluation workflow Individual claims | ml4bio/RNA-FM official source RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 348951516e0963d22bbb33b3c9fc18c89081d38e | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Entity type Task guide; concrete protocol identities remain separate. Individual claims | AlphaFold 3 paper RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature 2024; DOI 10.1038/s41586-024-07487-w; XML retrieved 2026-09-16 | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: primary_artifact_review |
| Entity type Task guide; concrete protocol identities remain separate. Individual claims | ml4bio/RNA-FM official source RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 348951516e0963d22bbb33b3c9fc18c89081d38e | source checked automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims | AlphaFold 3 paper RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: Nature 2024; DOI 10.1038/s41586-024-07487-w; XML retrieved 2026-09-16 | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: primary_artifact_review |
| Datasets No single dataset is fixed by this guide. Select a linked protocol and its versioned data release. Individual claims | ml4bio/RNA-FM official source RNA-FM README: RhoFold; AlphaFold 3 Methods: Nucleic acid prediction baseline and CASP15 RNA targets Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: 348951516e0963d22bbb33b3c9fc18c89081d38e | inapplicable automated source review · 2026-09-16 Audit detailsReviewed named primary documentation and existing protocol records. Editorial task scope is distinguished from source-reported procedures. No model execution or new numerical result; a reviewed guide is not a complete runnable protocol. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-09-17-d277315f7d76 · Record review: discovered
Stable ID: catalog-task-rna-tertiary-structure