DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r. Scored with Pearson r on DNase QTLs in Yoruban LCLs. Score the effect of a variant on chromatin accessibility, against the measured QTL call.
Overview
Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r. Scored with Pearson r on DNase QTLs in Yoruban LCLs. Score the effect of a variant on chromatin accessibility, against the measured QTL call.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- Caduceus (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- Caduceus (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- ChromBPNet (ab initio) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- DNABERT-2 (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- DNABERT-2 (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- GENA-LM (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- GENA-LM (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- HyenaDNA (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- HyenaDNA (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- Mistral-DNA (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- Mistral-DNA (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- Nucleotide Transformer (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
pearson_r (fraction) · Higher values are better for this metric.
Every method DART-Eval reports on Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r, scored with Pearson r on DNase QTLs in Yoruban LCLs.
Evaluation protocol · DNase QTLs in Yoruban LCLs (DART-Eval split)
- Caduceus (probed) · Configuration · Author-reported evaluation0.017
- Caduceus (fine-tuned) · Configuration · Author-reported evaluation0.513
- DNABERT-2 (probed) · Configuration · Author-reported evaluation0.024
- DNABERT-2 (fine-tuned) · Configuration · Author-reported evaluation0.473
- GENA-LM (probed) · Configuration · Author-reported evaluation0.059
- GENA-LM (fine-tuned) · Configuration · Author-reported evaluation0.414
- HyenaDNA (probed) · Configuration · Author-reported evaluation-0.042
- HyenaDNA (fine-tuned) · Configuration · Author-reported evaluation0.503
- Mistral-DNA (probed) · Configuration · Author-reported evaluation-0.003
- Mistral-DNA (fine-tuned) · Configuration · Author-reported evaluation0.053
- Nucleotide Transformer (probed) · Configuration · Author-reported evaluation0.129
- Nucleotide Transformer (fine-tuned) · Configuration · Author-reported evaluation0.507
- ChromBPNet (ab initio) · Method · Author-reported evaluation0.738
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row group(YORUBAN), column(Pearson r)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| Caduceus (probed) · Configuration | 0.017 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Caduceus), column(probed pearson_r) |
| Caduceus (fine-tuned) · Configuration | 0.513 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Caduceus), column(fine-tuned pearson_r) |
| DNABERT-2 (probed) · Configuration | 0.024 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban DNABERT-2), column(probed pearson_r) |
| DNABERT-2 (fine-tuned) · Configuration | 0.473 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban DNABERT-2), column(fine-tuned pearson_r) |
| GENA-LM (probed) · Configuration | 0.059 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban GENA-LM), column(probed pearson_r) |
| GENA-LM (fine-tuned) · Configuration | 0.414 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban GENA-LM), column(fine-tuned pearson_r) |
| HyenaDNA (probed) · Configuration | -0.042 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban HyenaDNA), column(probed pearson_r) |
| HyenaDNA (fine-tuned) · Configuration | 0.503 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban HyenaDNA), column(fine-tuned pearson_r) |
| Mistral-DNA (probed) · Configuration | -0.003 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Mistral-DNA), column(probed pearson_r) |
| Mistral-DNA (fine-tuned) · Configuration | 0.053 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Mistral-DNA), column(fine-tuned pearson_r) |
| Nucleotide Transformer (probed) · Configuration | 0.129 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban NT), column(probed pearson_r) |
| Nucleotide Transformer (fine-tuned) · Configuration | 0.507 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban NT), column(fine-tuned pearson_r) |
| ChromBPNet (ab initio) · Method | 0.738 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban ChromBPNet), column(ab initio pearson_r) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- The evaluation setting is part of the method name: a zero-shot, probed and fine-tuned run of the same model are different entries.
- Metrics and datasets differ between tasks, so these figures cannot be averaged into one score.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 13 evaluations · 13 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Caduceus (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: Caduceus (fine-tuned)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.513 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Caduceus), column(fine-tuned pearson_r) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: Caduceus (probed)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.017 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Caduceus), column(probed pearson_r) Source checking is not independent reproduction. |
| ChromBPNet (ab initio) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Method: ChromBPNet (ab initio)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.738 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban ChromBPNet), column(ab initio pearson_r) Source checking is not independent reproduction. |
| DNABERT-2 (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: DNABERT-2 (fine-tuned)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.473 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban DNABERT-2), column(fine-tuned pearson_r) Source checking is not independent reproduction. |
| DNABERT-2 (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: DNABERT-2 (probed)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.024 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban DNABERT-2), column(probed pearson_r) Source checking is not independent reproduction. |
| GENA-LM (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: GENA-LM (fine-tuned)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.414 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban GENA-LM), column(fine-tuned pearson_r) Source checking is not independent reproduction. |
| GENA-LM (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: GENA-LM (probed)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.059 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban GENA-LM), column(probed pearson_r) Source checking is not independent reproduction. |
| HyenaDNA (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: HyenaDNA (fine-tuned)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.503 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban HyenaDNA), column(fine-tuned pearson_r) Source checking is not independent reproduction. |
| HyenaDNA (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: HyenaDNA (probed)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| -0.042 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban HyenaDNA), column(probed pearson_r) Source checking is not independent reproduction. |
| Mistral-DNA (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: Mistral-DNA (fine-tuned)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.053 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Mistral-DNA), column(fine-tuned pearson_r) Source checking is not independent reproduction. |
| Mistral-DNA (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: Mistral-DNA (probed)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| -0.003 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban Mistral-DNA), column(probed pearson_r) Source checking is not independent reproduction. |
| Nucleotide Transformer (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: Nucleotide Transformer (fine-tuned)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.507 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban NT), column(fine-tuned pearson_r) Source checking is not independent reproduction. |
| Nucleotide Transformer (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r Configuration: Nucleotide Transformer (probed)Task: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson rDataset subset: DNase QTLs in Yoruban LCLs (DART-Eval split) Score the effect of a variant on chromatin accessibility, against the measured QTL call. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.129 pearson_r Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 6, row(Yoruban NT), column(probed pearson_r) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-dart-eval Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 6, row group(YORUBAN), column(Pearson r) Version: 2412.05430v1 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: dart-eval-association-vs-yoruban-pearson-r Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-task-vs-yoruban-pearson-r
- areas
- dna-genomes
- tasks
- Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- metric
- Pearson r
- metric direction
- higher
- dataset
- DNase QTLs in Yoruban LCLs
- protocol
- Score the effect of a variant on chromatin accessibility, against the measured QTL call.
- source locator
- Table 6, row group(YORUBAN), column(Pearson r)
- comparison panels
- id: dart-eval-panel-vs-yoruban-pearson-r; title: DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r; protocol id: dart-eval-task-vs-yoruban-pearson-r; dataset id: dart-eval-dataset-dnase-qtls-in-yoruban-lcls; metric: pearson_r; unit: fraction; direction: higher; result ids: dart-eval-result-caduceus-probed-vs-yoruban-pearson-r-pearson-r; dart-eval-result-caduceus-fine-tuned-vs-yoruban-pearson-r-pearson-r; dart-eval-result-dnabert-2-probed-vs-yoruban-pearson-r-pearson-r; dart-eval-result-dnabert-2-fine-tuned-vs-yoruban-pearson-r-pearson-r; dart-eval-result-gena-lm-probed-vs-yoruban-pearson-r-pearson-r; dart-eval-result-gena-lm-fine-tuned-vs-yoruban-pearson-r-pearson-r; dart-eval-result-hyenadna-probed-vs-yoruban-pearson-r-pearson-r; dart-eval-result-hyenadna-fine-tuned-vs-yoruban-pearson-r-pearson-r; dart-eval-result-mistral-dna-probed-vs-yoruban-pearson-r-pearson-r; dart-eval-result-mistral-dna-fine-tuned-vs-yoruban-pearson-r-pearson-r; dart-eval-result-nucleotide-transformer-probed-vs-yoruban-pearson-r-pearson-r; dart-eval-result-nucleotide-transformer-fine-tuned-vs-yoruban-pearson-r-pearson-r; dart-eval-result-chrombpnet-ab-initio-vs-yoruban-pearson-r-pearson-r; source ids: evidence-expansion-p2-evidence-discovery-final-dart-4194b137ba55; source locator: Table 6, row group(YORUBAN), column(Pearson r); context: Every method DART-Eval reports on Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r, scored with Pearson r on DNase QTLs in Yoruban LCLs.; caveats: Author-reported numbers, source checked but not independently reproduced.; The evaluation setting is part of the method name: a zero-shot, probed and fine-tuned run of the same model are different entries.; Metrics and datasets differ between tasks, so these figures cannot be averaged into one score.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: DART-Eval
- subject: DART-Eval VS-YORUBAN-PEARSON_R: part of discovery-benchmark-dart-eval
- benchmark: Caduceus (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: Caduceus (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: ChromBPNet (ab initio) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: DNABERT-2 (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: DNABERT-2 (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: GENA-LM (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: GENA-LM (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: HyenaDNA (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: HyenaDNA (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: Mistral-DNA (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: Mistral-DNA (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: Nucleotide Transformer (fine-tuned) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r
- benchmark: Nucleotide Transformer (probed) on DART-Eval VS-YORUBAN-PEARSON_R: Variant scoring on DNase QTLs in Yoruban LCLs, Pearson r